Transcript Information: S_Transcript_83008.p1


Annotated TAIR IDAT1G72390.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:27245455-27251218 | Forward length=1325
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.6947361642443
Replicate 29.42046093805
Replicate 310.553343425616
Condition 2: 8 Hour
Replicate 18.9532789506058
Replicate 28.1675002970431
Replicate 37.240621249946
Condition 3: 24 Hour
Replicate 110.870430117939
Replicate 211.259957179995
Replicate 39.3681879219003


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_83008.p1 GENE.S_Transcript_83008~~S_Transcript_83008.p1 ORF type:complete len:1260 (+),score=304.98,Spt20|PF12090.4|4.3e-14,Spt20|PF12090.4|1.6e+04,Spt20|PF12090.4|5.1e+03 S_Transcript_83008:671-4450(+)
ATGGGAGTTTCCTTCAAAATCAACAGAACTGGAACCAGGTTTAAGCCCAAGCCACTAATTCAGGATTCAACTCCCTTCAATGATGCCACTGAGAATTCTCTCGAAACTTCCAGAATTCAATCGAAGAACCAGTCCAATGGGAAGGATGAAGATGCTATCGGTCCTTCGAGTTCATCATTATCCTCTGGAAAGTGTCAAGTTTCTGTAGATGATGAAGTTTCCTTCGTTCTGAATCTGTACCCGGATGGATATTTAATTGGAAAGCCATCAGAGAATGATACTGGATTCCATGCTGCCTTTCAAGAGGGTTCAAAGTTATTGCATCCATATGACCGGACATCAGAAGGCCTCTTTGCGGCTATTGAGTCAGGTCGCTTACCTGGAGGTGTTCTGGATGATATACCTTGCAAATATGTAGAAGGTGCACTTATATGTGAGGTTCGGGACTACCGGAAATGCAGTTCTGGTTCTGGAGCCAACATTCCATCAGTTGATGGATCTGCAACTGTTACCAAGGTGCGTCTTAAGATGTCCTTGGAGAATGTTGTGAAGGATATTCCATTGATAGCTGAGGATTCTTGGACTTATGGAGACCTGATGGAAGTAGAGTCTCGAATATTGAAAGCTCTACAACCAAAGCTGTGTCTTGATCCTGCTCCCAGATTGGAAAGACTTTGTGAGAACCCAGTTTCCTCTAAGCTTAATCTGGGACTGGTGGGAGCACGAAAGAGGAGATTGAGACAAATGCCAGAAATTACTGTCACGTCAAATAATCGGCCACATGGAAAGAAAATTTGTATAGACCGGGCACCCGGAAGCTCAAGCTACAGAATTGGAGAATTAGGGCCCTCATCTGGTGACATGATGTCACAGCATGTCCAAAATAATGTAGCTGCCCAAGGGTCAGCGAATCAAAGAAATGTGCACGATCATATGCAAGGTCCCTCCAACTTACCAGGAGTTTCACTTGCTGGTCAGGATATGCCAATTTCATACGCTGACAATGTGAATTCTACTAACCTTATAAAGATGGAAAGTCAGGAAGGGCAGTTGCCTCCTTATTCTACTCTAAATAAGAGGGCAAGGCTTGTATCTGTTGGTCCTGATGGTGTTCAGCAGCAGCAAAATGGGTCTTCTGTCAATGGCCTTCAAGCACCAGATGTGCAGTGGAGGAATCCATTGGTGCAACAGCAACAGAATGCAAGAGCAATGCAGTTTGCTAATCCTAGCATGCAGAAGTATCCTCAACTAGTTGGTGATGGGGTTTCCAACCATGATAGCATAAAATTAGAGAAAGCGGATGGCAATCTGGCTAAAACTGATATGCAGATGATGGAAGCAGAAAGCAGCCACATGGATCCCCGACAAAGGTTTCAGCCAAACTCCTTCATGAGACCTACTTTCCAACAGCCGAACTGGAGTAATTTTGGCCAGCAAATTGAAAAAGATCCAAGAAAGGAGGATCAATTTTCCAAGAGAAAATCAATTCAAAGTCCACGTCTTTCCGCTGGGGCTGTGGCTCAGTCTCCTTTATCAGCAAAGTCTGGAGAGATCTCTTGTGGTTCAATGGGGGCACAGTATGGGGCAATTTCTTCTGCTGCTCCTCTTGGGCAATTGCAAAGGGACAAATCAGTTGTGACATCAATTCCTGCAGATCGGGCTACATCCATGACGTCAAGTGCCAATGATTCTATGCAGCCACAGCATCAGGCCCAACTCACAACAAAGAGAAGGTCTAATTCCTTTTCCAAGAACCCAGGAATAAGCGCTGTGGGGTCTCCTGCTAGTGTCAACACTATGGGTGGCCCGATGAATGCATCTAGCCCTTCAGTTAGCACCCCACAGTTACCTGACCAAAGCATGATTGAGAGGTTTGCCAAGCTTGAGGTGGTAGCTATGAGGCATCAGTTGAACTGTAAAAAGAACAAGGTTGACGAATTTGCTAGAAAGCCACGATTATTTTCTGCACAAGAACTCCTGGTTCGCCTCTCAAGTACTACCAATAACGAGTCTGTTAAAGATGAAACTGGTCCAACACCAATGTCAAGGTCACTAATTGGTGGCAACATAAATGCATGCAAGATAAGGGTCTTAAATTTGCGGTCACAAGCAAATATTATTCCTGTTTCTCCGGGGGTAAGATCTAGAATGATCATGTCAGAGAAACCAAATGATGGTACTGTGGCTATGCATTATGGAGATTTGGAAGATGGGGACTATATCAATGCAGAAGATCATCTGCCTACATTGCCTAATACTCATTTGGCAGACTTGCTTGCAGCCCAGTTTTGTACTCTGATGAATCGTGAGGGCTACGCTGTAGATGATCACATCCAATCTAGACCAACCCGTATAAATACTACTTCCAACTCTCAACCAAATGCTCTGGGTCTTGCCCCTAATAATTCAGCAGGTGATATGCAGCAGCAGTATTCAGAATCAGGACAGCAAACAAGCGAGACCAAGCCAACAATTACCAGTGCTGCCGCTTTGAACTTGACTCCAACTGTCCTGCCGGGCTCTGGGATGCTCCCTCCTGGTAATTCACAGGCCTTACAGATGTCTCAGGGACTTGTGTCGGGGGTCTCAGTGTCGCCAAGGACACAGCAGATGGACCCGCAACAGGCACTTCAACAGCAACAGCAGCAGCCGACGCAGCAGCAAATGCCGCATCAGAATCAGGCATCGTTGATGGCACAACAGCAAGCTCAGTTCCCACGGTCTCCAATGATGTTGCCGACCAATTCAATGCCGCAAATGAATACATTCGGGCAAAATCCGAACTTGCCACTGAGTAGTCAGATGGGCAATAAGCCTTCTCTACAACTGTTACAGCAGCAGCAGCAGCAGTCCCAGCAAGTTCCTCAGATGCAAAGAAGAATGATGATGGGGCTCGGACCGGCTATGGGTATGGGAAGTATCGGCAATAACATGGTTGGACTTGGAGGATTGGGTAATGTTATGGGAATTGGAGCCAGAGGGATGAGTGCAACTGGAATCTCGTCACCGATGGGCACCATCTCGGGAGTTGGGACCAACATGGCTCAGAACCCAATCAACATGAGCCAGGCAAATGCGATTAGCCAGCACATTCGTGCTGGGGCATTGAGCCAACACCAAGCTCAGGCTGCTATGCTTCAAAGATTAAAAATGATGCAAAGCCGTGGCTTGCTAGGAACGCAGTCCGGTTTGGCTGGTATCTCTGGAGGAGCCCGGCAGCTGCAGCCTGGTTCAGCTGGGCTTTCCATGTTGGGCCAGAATCTAAACAGAGGAAACATCCCAATGCAAAGAACAATGGGCCAGATGGGTATGCCCAAATTAATGACAGGGATGAGCGTTCCGATGAACCAGCAACAAATGCAGCTTCAGCAGCAACAGCTCCAGCAACAGCAACAGCAACAAATGCAGCTCCAGCAGCAACTGCAGCAGCAACAAACACAACAGCAGCAGATGCAACCGTCAGAAGCCACCTCACCACTGCAGGCTGTGGTTTCGCCCCAGCAGGTGGGGTCACCTTCGACACTAGGAATTCCACACCCCATAAGTCAACAGGTTACACCACAGCAACAACAAGCGAGCCCACAACAAATGGGGCAACGGACTCCGATGAGCCCGCCTTTGAGTTCGGGGCCCATGCATCCAATGAGTGCTGGTAACCAAGAGGCTTGTCCTGCAAGCCCCGCCTTGAGCTCTCAAACCTTAGGCTCTGTTGGGAGCATAACAAATTCTCCTATGGATCTGCAAGGGGTGAACAAGAGCAATTCTGTCACTAATACATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_83008.p1 GENE.S_Transcript_83008~~S_Transcript_83008.p1 ORF type:complete len:1260 (+),score=304.98,Spt20|PF12090.4|4.3e-14,Spt20|PF12090.4|1.6e+04,Spt20|PF12090.4|5.1e+03 S_Transcript_83008:671-4450(+)
MGVSFKINRTGTRFKPKPLIQDSTPFNDATENSLETSRIQSKNQSNGKDEDAIGPSSSSLSSGKCQVSVDDEVSFVLNLYPDGYLIGKPSENDTGFHAAFQEGSKLLHPYDRTSEGLFAAIESGRLPGGVLDDIPCKYVEGALICEVRDYRKCSSGSGANIPSVDGSATVTKVRLKMSLENVVKDIPLIAEDSWTYGDLMEVESRILKALQPKLCLDPAPRLERLCENPVSSKLNLGLVGARKRRLRQMPEITVTSNNRPHGKKICIDRAPGSSSYRIGELGPSSGDMMSQHVQNNVAAQGSANQRNVHDHMQGPSNLPGVSLAGQDMPISYADNVNSTNLIKMESQEGQLPPYSTLNKRARLVSVGPDGVQQQQNGSSVNGLQAPDVQWRNPLVQQQQNARAMQFANPSMQKYPQLVGDGVSNHDSIKLEKADGNLAKTDMQMMEAESSHMDPRQRFQPNSFMRPTFQQPNWSNFGQQIEKDPRKEDQFSKRKSIQSPRLSAGAVAQSPLSAKSGEISCGSMGAQYGAISSAAPLGQLQRDKSVVTSIPADRATSMTSSANDSMQPQHQAQLTTKRRSNSFSKNPGISAVGSPASVNTMGGPMNASSPSVSTPQLPDQSMIERFAKLEVVAMRHQLNCKKNKVDEFARKPRLFSAQELLVRLSSTTNNESVKDETGPTPMSRSLIGGNINACKIRVLNLRSQANIIPVSPGVRSRMIMSEKPNDGTVAMHYGDLEDGDYINAEDHLPTLPNTHLADLLAAQFCTLMNREGYAVDDHIQSRPTRINTTSNSQPNALGLAPNNSAGDMQQQYSESGQQTSETKPTITSAAALNLTPTVLPGSGMLPPGNSQALQMSQGLVSGVSVSPRTQQMDPQQALQQQQQQPTQQQMPHQNQASLMAQQQAQFPRSPMMLPTNSMPQMNTFGQNPNLPLSSQMGNKPSLQLLQQQQQQSQQVPQMQRRMMMGLGPAMGMGSIGNNMVGLGGLGNVMGIGARGMSATGISSPMGTISGVGTNMAQNPINMSQANAISQHIRAGALSQHQAQAAMLQRLKMMQSRGLLGTQSGLAGISGGARQLQPGSAGLSMLGQNLNRGNIPMQRTMGQMGMPKLMTGMSVPMNQQQMQLQQQQLQQQQQQQMQLQQQLQQQQTQQQQMQPSEATSPLQAVVSPQQVGSPSTLGIPHPISQQVTPQQQQASPQQMGQRTPMSPPLSSGPMHPMSAGNQEACPASPALSSQTLGSVGSITNSPMDLQGVNKSNSVTNT*

Click here to download the sequence:
Link to NCBI Protein BLAST