Transcript Information: S_Transcript_83083.p1


Annotated TAIR IDAT4G10340.1
Annotated Gene Namelight harvesting complex of photosystem II 5
Annotated Gene Symbol(s)LHCB5
Annotation TypeOrtholog
Chromosome Positionchr4:6408200-6409496 | Forward length=280
E-Value1.1E-76
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13436.0091001523
Replicate 23287.1686712769
Replicate 33662.9149394514
Condition 2: 8 Hour
Replicate 11421.2107580842
Replicate 21464.2185342763
Replicate 31420.5747929286
Condition 3: 24 Hour
Replicate 13301.3542990489
Replicate 23565.5169330789
Replicate 33364.7917205537


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_83083.p1 GENE.S_Transcript_83083~~S_Transcript_83083.p1 ORF type:5prime_partial len:118 (+),score=38.45,Chloroa_b-bind|PF00504.17|5.8e-20 S_Transcript_83083:1-354(+)
GGGAAGAACATCCCCATCAATCTCATTGTCGCCGTTGTTGCTGAGGTTGTTCTTGTTGGTGGTGCTGAGTACTACAGAATCATCAATGGCTTGGATTTGGAGGACAAGCTTCACCCAGGAGGCCCATTTGACCCATTGGGCTTGGCAAAGGACCCAGACCAGGCAGCATTGTTGAAGGTGAAGGAAATCAAGAATGGCAGGCTAGCTATGTTTGCAATGTTGGGCTTCTTCCTCCAAGCCTATGTGACCGGTCAAGGCCCAGTTGAGAACCTAGCTGCTCACCTTAGCGACCCATTTGGCAACAACTTGCTCACTGTTATTGCTGGCTCTGCTGAAAGAGCTCCTACCCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_83083.p1 GENE.S_Transcript_83083~~S_Transcript_83083.p1 ORF type:5prime_partial len:118 (+),score=38.45,Chloroa_b-bind|PF00504.17|5.8e-20 S_Transcript_83083:1-354(+)
GKNIPINLIVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFLQAYVTGQGPVENLAAHLSDPFGNNLLTVIAGSAERAPTL*

Click here to download the sequence:
Link to NCBI Protein BLAST