Transcript Information: S_Transcript_8316.p1


Annotated TAIR IDAT1G67680.1
Annotated Gene NameSRP72 RNA-binding domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:25365962-25368464 | Reverse length=664
E-Value1.1E-251
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.0758370109319
Replicate 27.9551443697611
Replicate 38.9429253122965
Condition 2: 8 Hour
Replicate 19.7346808374835
Replicate 210.252108257637
Replicate 310.638993209591
Condition 3: 24 Hour
Replicate 17.2945614497899
Replicate 29.3795170466944
Replicate 37.7950901003378


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_8316.p1 GENE.S_Transcript_8316~~S_Transcript_8316.p1 ORF type:3prime_partial len:563 (+),score=147.12,SRP_TPR_like|PF17004.1|2.3e-15,SRP_TPR_like|PF17004.1|2.4e+03,SRP_TPR_like|PF17004.1|2.8e+03,TPR_16|PF13432.2|1.4,TPR_16|PF13432.2|0.21,TPR_16|PF13432.2|10,TPR_16|PF13432.2|49,TPR_16|PF13432.2|5.7e+02,TPR_16|PF13432.2|1.2,TPR_16|PF13432.2|0.1,TPR_16|PF13432.2|3.4e+03,TPR_16|PF13432.2|1.8,TPR_19|PF14559.2|0.0026,TPR_19|PF14559.2|0.67,TPR_19|PF14559.2|1.4e+03,TPR_19|PF14559.2|2.9e+02,TPR_19|PF14559.2|2.1e+02,TPR_19|PF14559.2|46,TPR_19|PF14559.2|0.25,TPR_19|PF14559.2|0.34,TPR_19|PF14559.2|1.2e+02,ANAPC3|PF12895.3|3.7e-05,ANAPC3|PF12895.3|0.54,ANAPC3|PF12895.3|5.3e+02,ANAPC3|PF12895.3|1.6e+03,ANAPC3|PF12895.3|1.2e+02,ANAPC3|PF12895.3|48,ANAPC3|PF12895.3|3.3e+02,TPR_12|PF13424.2|1.9e+03,TPR_12|PF13424.2|35,TPR_12|PF13424.2|2.5e+02,TPR_12|PF13424.2|4.9,TPR_12|PF13424.2|2.1,TPR_12|PF13424.2|0.0055,TPR_2|PF07719.13|21,TPR_2|PF07719.13|3.8e+03,TPR_2|PF07719.13|0.042,TPR_2|PF07719.13|22,TPR_2|PF07719.13|56,TPR_2|PF07719.13|30,TPR_2|PF07719.13|15,TPR_2|PF07719.13|2.6e+03,TPR_2|PF07719.13|1.4e+03,TPR_2|PF07719.13|3.6e+03,TPR_2|PF07719.13|1.8e+02,TPR_6|PF13174.2|4e+02,TPR_6|PF13174.2|3.4,TPR_6|PF13174.2|1.4e+02,TPR_6|PF13174.2|9.5e+03,TPR_6|PF13174.2|8.5,TPR_6|PF13174.2|5.8e+03,TPR_6|PF13174.2|75,TPR_6|PF13174.2|12,TPR_6|PF13174.2|2.5e+03,TPR_6|PF13174.2|1.2e+04,TPR_6|PF13174.2|12,TPR_14|PF13428.2|4.2,TPR_14|PF13428.2|1.2e+04,TPR_14|PF13428.2|1.7e+02,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|1.8e+02,TPR_14|PF13428.2|46,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|6.1e+02,TPR_14|PF13428.2|29,TPR_14|PF13428.2|79,PPR|PF01535.16|6.4e+02,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|3.8e+02,PPR|PF01535.16|5.5e+02,PPR|PF01535.16|7.5e+02,PPR|PF01535.16|1.8 S_Transcript_8316:273-1958(+)
ATGGCGCCTAAAGCGAAGGGGAAACCTGCTCAATCGCAACCAGCAATGTCAATAGAAGATCTCTTCACTTCCCTCGATCGGCATATTAAAGAAACTCAATACCAAAGGGCTGTCAAAGTTGCTGATCAAATTTTGGCAATCGCACCGGGTGATGAGGATGCACTTCGGTGCAAGATTGTTGCTCTGATTAAAGCTGATAATATTGATGAAGCTTTCAAGACTATCCAATCTTCTCATAAGCTCCCCATTGATCTCAATTATTACAAGGCATATTGTTTATACAGGCAAAACAAATTGGATGAAGCTTTGGAATCTTTGGAAAGCCAAGAAAGAAGCGATCTGACTATGCTGCTGGAATCCCAGATTTTGTATCGTTTGGGAAAATTTGATGCTTGTTTGAAAATTTATCAATCACTTCAGAGTGACAAAATTGAATCCTTGGAGGTCAACTTTGTTGCTGCTTTGGTAGCCGCTGGGCGATCATCTGAGGTGCAAAAAACATTGGATGCACTCAAAGTTAAACCAACAAGCCAGTATGAGTTAGCTTACAACACTGCTTGCTCATTGATTGAGAGGCAAAGTTATGCTGAAGCAGAGCAGCTCTTGCTGGCTGCTCGAAGAGTGGGCCAGGAAGCTTTTATGGAAGATAACTGGGCAGATGACGAGATAGAGAGTGAATTGATTCCTATCACTGTCCAACTGGCATATGTTCAACAGCTTCTTGGAAACAAACAAGAAGCATTAGAAATATACATAGACATTATCAGAAAGAATTTTGACGATGACTCAACACTTGCGGTGGCAACAAACAATTTAATTACTCTTAGAGGTCCAAAAGATGTTTCTGACAGCCTAAAGAAGCTTGATCGGCTTATAGAGAAAGCTGATGGAAGTCGCTTCCAACTGGTTCGCGGGCTGGAGTTGAAGCTTTTTGCCAATCAGAAGGAGGCAATCTACACTAACCGAGCACTTCTACTCCTCCATGCTAACAGAATGGATCAGGCTCGTGAACTTGTTACTGCTCTACTTGGCATGTTTCCAGACAGTGTGATGCCTGTACTGCTTCAAGCTGCTGTATATGTGAGAGAGAACAAGGCAGGAAAAGCTGAAGAAGTGCTAGGGCAGTTTGCTGAAAGGTTCCCAAATAAGTCTAAGCTATTTCTCCTTGCGAGGGCCCAAGTGGCTGCTGCAGCTGGGCACTCTCAAGTTGCTGCAAAGTCTCTCGCCAAGATCCCTGATATTCAACACATGCCTGCGACTGTGGCCACCATTGTAGCTCTTAAAGAGCGTGCTGGAGATATTGATGGTGCGGAAGTTGTATTTGACTCTGCAATCAAGTGGTGGTCAAATGCCATGACAGAGGACAACAAACTAACTGTGATTATGCAGGAGGCTGCTTCCTTCAAGCTCAAGCATGGTAGAGAGCGGGAGGCTTTACAGTTATTTGAGGAACTTGTTAGGAACCACAAAAGCATTGATGCATTGGCAGGACTAGTAATTACTGCTGCTCGTGTAGACGTTGAAAAAGCTGAAGCTTACGAAAAGCAACTTAAGCCACTTCCTGGTCTGAAGGCGGTTGATATTGATGCTCTCGAAAAGACTTCTGGTGCGAAGCCCACTGAAAACAGTTCCCGCGTGGTAACCATAGAAGGGAATGAGGACAATAAAAACAAGGATAAAACTAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_8316.p1 GENE.S_Transcript_8316~~S_Transcript_8316.p1 ORF type:3prime_partial len:563 (+),score=147.12,SRP_TPR_like|PF17004.1|2.3e-15,SRP_TPR_like|PF17004.1|2.4e+03,SRP_TPR_like|PF17004.1|2.8e+03,TPR_16|PF13432.2|1.4,TPR_16|PF13432.2|0.21,TPR_16|PF13432.2|10,TPR_16|PF13432.2|49,TPR_16|PF13432.2|5.7e+02,TPR_16|PF13432.2|1.2,TPR_16|PF13432.2|0.1,TPR_16|PF13432.2|3.4e+03,TPR_16|PF13432.2|1.8,TPR_19|PF14559.2|0.0026,TPR_19|PF14559.2|0.67,TPR_19|PF14559.2|1.4e+03,TPR_19|PF14559.2|2.9e+02,TPR_19|PF14559.2|2.1e+02,TPR_19|PF14559.2|46,TPR_19|PF14559.2|0.25,TPR_19|PF14559.2|0.34,TPR_19|PF14559.2|1.2e+02,ANAPC3|PF12895.3|3.7e-05,ANAPC3|PF12895.3|0.54,ANAPC3|PF12895.3|5.3e+02,ANAPC3|PF12895.3|1.6e+03,ANAPC3|PF12895.3|1.2e+02,ANAPC3|PF12895.3|48,ANAPC3|PF12895.3|3.3e+02,TPR_12|PF13424.2|1.9e+03,TPR_12|PF13424.2|35,TPR_12|PF13424.2|2.5e+02,TPR_12|PF13424.2|4.9,TPR_12|PF13424.2|2.1,TPR_12|PF13424.2|0.0055,TPR_2|PF07719.13|21,TPR_2|PF07719.13|3.8e+03,TPR_2|PF07719.13|0.042,TPR_2|PF07719.13|22,TPR_2|PF07719.13|56,TPR_2|PF07719.13|30,TPR_2|PF07719.13|15,TPR_2|PF07719.13|2.6e+03,TPR_2|PF07719.13|1.4e+03,TPR_2|PF07719.13|3.6e+03,TPR_2|PF07719.13|1.8e+02,TPR_6|PF13174.2|4e+02,TPR_6|PF13174.2|3.4,TPR_6|PF13174.2|1.4e+02,TPR_6|PF13174.2|9.5e+03,TPR_6|PF13174.2|8.5,TPR_6|PF13174.2|5.8e+03,TPR_6|PF13174.2|75,TPR_6|PF13174.2|12,TPR_6|PF13174.2|2.5e+03,TPR_6|PF13174.2|1.2e+04,TPR_6|PF13174.2|12,TPR_14|PF13428.2|4.2,TPR_14|PF13428.2|1.2e+04,TPR_14|PF13428.2|1.7e+02,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|1.8e+02,TPR_14|PF13428.2|46,TPR_14|PF13428.2|1.3e+02,TPR_14|PF13428.2|6.1e+02,TPR_14|PF13428.2|29,TPR_14|PF13428.2|79,PPR|PF01535.16|6.4e+02,PPR|PF01535.16|1.5e+03,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|3.8e+02,PPR|PF01535.16|5.5e+02,PPR|PF01535.16|7.5e+02,PPR|PF01535.16|1.8 S_Transcript_8316:273-1958(+)
MAPKAKGKPAQSQPAMSIEDLFTSLDRHIKETQYQRAVKVADQILAIAPGDEDALRCKIVALIKADNIDEAFKTIQSSHKLPIDLNYYKAYCLYRQNKLDEALESLESQERSDLTMLLESQILYRLGKFDACLKIYQSLQSDKIESLEVNFVAALVAAGRSSEVQKTLDALKVKPTSQYELAYNTACSLIERQSYAEAEQLLLAARRVGQEAFMEDNWADDEIESELIPITVQLAYVQQLLGNKQEALEIYIDIIRKNFDDDSTLAVATNNLITLRGPKDVSDSLKKLDRLIEKADGSRFQLVRGLELKLFANQKEAIYTNRALLLLHANRMDQARELVTALLGMFPDSVMPVLLQAAVYVRENKAGKAEEVLGQFAERFPNKSKLFLLARAQVAAAAGHSQVAAKSLAKIPDIQHMPATVATIVALKERAGDIDGAEVVFDSAIKWWSNAMTEDNKLTVIMQEAASFKLKHGREREALQLFEELVRNHKSIDALAGLVITAARVDVEKAEAYEKQLKPLPGLKAVDIDALEKTSGAKPTENSSRVVTIEGNEDNKNKDKTK

Click here to download the sequence:
Link to NCBI Protein BLAST