Transcript Information: S_Transcript_83848.p2


Annotated TAIR IDAT1G50120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:18562302-18566015 | Forward length=532
E-Value1.7E-81
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.6973115691183
Replicate 27.7438930234986
Replicate 36.8396902031896
Condition 2: 8 Hour
Replicate 18.8973482780091
Replicate 29.0376342186975
Replicate 311.434328847705
Condition 3: 24 Hour
Replicate 17.3780732319225
Replicate 29.9060368479399
Replicate 36.1802360462867


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_83848.p2 GENE.S_Transcript_83848~~S_Transcript_83848.p2 ORF type:complete len:151 (+),score=27.75,Rgp1|PF08737.6|9.3e-13 S_Transcript_83848:1940-2392(+)
ATGATAGGTGGGACCCTTACTTTCTTTCATGAAGAAGGAACAAGGAGGTGCCTTGAGGTTTCAGTTACCTTAGAGATCTTGGAGACTATAAATCGACGTTTTGTTCACCCATCTCGTAGGAATGCCCCCACAATAACAAAGGTTCACAGTGATCATCATGAGGTTGTTGCTGATATAGTGCAAACAAGCTTTCTCTTCTCTATCCCCATGGATGGGCCAATGTCTTTTTCAACTCCCCATGTATCTGTTCAATGGGCTCTGCGGTTTGAATTTTTCACCACTCCAAAGAATGTTGACTACAGCAGGTATGATCATCTGCTTCTTGTAGAGGGAAGAGACAAATGTGAGTGGTCTCTTCCAATTACCGTGCATGCACCTCAGCCGGGACCTGCAGCTGCCCATGCAAGAAGTAGAAAGAACCTCTCATATGAGTCCTTTTGGGTTCGTGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_83848.p2 GENE.S_Transcript_83848~~S_Transcript_83848.p2 ORF type:complete len:151 (+),score=27.75,Rgp1|PF08737.6|9.3e-13 S_Transcript_83848:1940-2392(+)
MIGGTLTFFHEEGTRRCLEVSVTLEILETINRRFVHPSRRNAPTITKVHSDHHEVVADIVQTSFLFSIPMDGPMSFSTPHVSVQWALRFEFFTTPKNVDYSRYDHLLLVEGRDKCEWSLPITVHAPQPGPAAAHARSRKNLSYESFWVRD*

Click here to download the sequence:
Link to NCBI Protein BLAST