Transcript Information: S_Transcript_83976.p1


Annotated TAIR IDAT3G52260.3
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:19383452-19386440 | Reverse length=416
E-Value5E-110
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.745785841725
Replicate 20.8755075221236
Replicate 32.2931444336752
Condition 2: 8 Hour
Replicate 12.7079860720169
Replicate 22.3082066056861
Replicate 31.4661694119828
Condition 3: 24 Hour
Replicate 11.5025581236917
Replicate 20.95931477571841
Replicate 31.0675997631795


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_83976.p1 GENE.S_Transcript_83976~~S_Transcript_83976.p1 ORF type:complete len:378 (+),score=51.33,PseudoU_synth_2|PF00849.18|8.2e-24 S_Transcript_83976:104-1237(+)
ATGTCGACGACTACCAAAACCACCACCACCACCATTGGAATACCTTGGCCTGAGTTCAACGATGGCCTCTCTTACCACGACGTCGTTTCTCCTTCTCATTCTGGGTTTACTCTCATCGATTTCTACTCAACCAATCACAAAACCTCAGCCCCCTTGCAAGGTTGGTTGCAGCGAATCCACAATAGACAGATTAAGATCGATGGCGAAACTGTTACTGATCCCAACACAATTCTTAGAGCTGGGTCAGAGTTGGTGTATCATCGACTCCCGTGGAAGGAGCCTGAAACACCTTACTTGATCGAGGTGTTGTATGAAGATGATGATATGATCGCTTTGAATAAGCCATCTGGCCTGCAAGTCTTACCTGGAGGACTCTTCCAGCAGCGCACTGTCTTAACACAGCTTCAATGGCATGCAGACGAGATTAGCAATTTACCATCAGGGCAAGACCGTCATCCTGTTCCTGTTCACCGCCTTGGCAGGGGCACATCAGGATTGCTCCTTTGTGCAAAGACAAAACAGGCAAAGGCTCACCTTGCCGCATATTTTGCTGATGGAACATCGTTGGTGAGAGAAAAAAGAGAGATAAACTTAGAACTTCAAGTGGGGCGAAAGATTACCAAGATATATCGGGCACTAGTCAAGGGGATAGTAGATTTGGATGAGATTGTAATCAACCAGCCAATTGGAACAATGCGATATCCTGGTGTGGCAAGGGGTCTTTATGCTGCATTGCCCTCAGGTAAACCAGCATTGAGCAAAGTACAGGTCCTTGAAAGAGATCTAGAGAAAGATCAGACACTAGTCCAGGTGGAGATACAGTCAGGAAGGCCTCATCAAATCCGCATACATCTTTCTTTAATAGGGCATCCACTAATAGGTGATCCTCTTTATGTTGCTGGTGGTCAACCAAAGTGCTTCAACTCTGAATCAGTAGAAGAAAGTTTTGCGGAAGATGGGTATGGGAAGATGAACTTAAATAAAGGGATACGAGTGATGAATCTAATGCTGTCACTGCTTATCAGTTATCACCAGTGTTTGCCTCTTTCTTTGAAACTGTTCCAAATTGAATACATTGAGATGAAAGCCATTCATTATCAAGTTGGCAACGGTCAATTCGGGAAATTTGCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_83976.p1 GENE.S_Transcript_83976~~S_Transcript_83976.p1 ORF type:complete len:378 (+),score=51.33,PseudoU_synth_2|PF00849.18|8.2e-24 S_Transcript_83976:104-1237(+)
MSTTTKTTTTTIGIPWPEFNDGLSYHDVVSPSHSGFTLIDFYSTNHKTSAPLQGWLQRIHNRQIKIDGETVTDPNTILRAGSELVYHRLPWKEPETPYLIEVLYEDDDMIALNKPSGLQVLPGGLFQQRTVLTQLQWHADEISNLPSGQDRHPVPVHRLGRGTSGLLLCAKTKQAKAHLAAYFADGTSLVREKREINLELQVGRKITKIYRALVKGIVDLDEIVINQPIGTMRYPGVARGLYAALPSGKPALSKVQVLERDLEKDQTLVQVEIQSGRPHQIRIHLSLIGHPLIGDPLYVAGGQPKCFNSESVEESFAEDGYGKMNLNKGIRVMNLMLSLLISYHQCLPLSLKLFQIEYIEMKAIHYQVGNGQFGKFA*

Click here to download the sequence:
Link to NCBI Protein BLAST