Transcript Information: S_Transcript_84408.p1


Annotated TAIR IDAT2G15980.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:6951349-6952845 | Reverse length=498
E-Value2.9E-130
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4825607085099
Replicate 24.050590270325
Replicate 33.2058662332821
Condition 2: 8 Hour
Replicate 13.7902549196467
Replicate 23.6703814174551
Replicate 34.079986455641
Condition 3: 24 Hour
Replicate 15.2905577203783
Replicate 23.4084247878491
Replicate 34.4335624930868


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_84408.p1 GENE.S_Transcript_84408~~S_Transcript_84408.p1 ORF type:5prime_partial len:512 (+),score=76.87,PPR_2|PF13041.2|5.5e+02,PPR_2|PF13041.2|1e+02,PPR_2|PF13041.2|9.3e-11,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|2.7e-11,PPR_2|PF13041.2|1.7e-07,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|0.021,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|21,PPR_1|PF12854.3|96,PPR_1|PF12854.3|2.5e-05,PPR_1|PF12854.3|1.5e-11,PPR_1|PF12854.3|0.0046,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|6.6e-05,PPR|PF01535.16|2.2e+02,PPR|PF01535.16|40,PPR|PF01535.16|0.078,PPR|PF01535.16|0.00012,PPR|PF01535.16|6.3e-07,PPR|PF01535.16|0.0015,PPR|PF01535.16|4.9e+02,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.019,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.065,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|0.7 S_Transcript_84408:2-1537(+)
TCAGTCCTCCTACAAACTCGAAAGCGTTTACTTCCCACCTCTCTCACCTCCCCATCGCCATCACCTTCCACTATGTCATCACCACTCCTCAAACGCGCCGCCTTCATCCCACGCGCCACCACGAAACCCTCCTTCCTCTCATCCTCCACCACCAATTCAGACCAAGACGACACCGTATCAAAAGCCGTAACCGCCCTACTCCACCACCGCTCAAAGTCCCGCTGGTCCACTCTCAAATCCCTCTTCCCAAACGGCTTCACTCCCTCCCAAATTTCCCAAATTCTCCTCCAAATCCGTAACAACCCCCACCTCTCCCATTCCTTCTTCACTTTCGCCCTTCCCAAATCCCCAAAACACCCCTCCTCTTCTCTTCCTACCCTCCATTGCTACGCCACCCTCATCCACATCTTGGGCCGGGCCCGCCTCAAATCCCGGGCCCGATTCCTCATCAAGGAAGCCCTCCGGATCTCCCATCTTGATGATCATGATGATGGGTCCCACCAAAGACCCAAACTTTTTTTTCGTGTATTGGTTGACACTTATAGGGTATGCAATTCTTCACCTCTTGTGTTTGATTTATTTCTCAAATCCCTCTTAGAACTAAATAAGATAGACCCATGTGTTGAAATTGTGAGATTGTTAATGCCACGTGGCTTTTACCCTCATGGTAAGACTTGTAATGCCTTGGTTTCAGCTGCTTGTAGGAGTAAAGGTTGTTTCTTTGGCTATGATTTGTATAGGGAGTTGTTTAGATTCAATCATGATGATTGTGATAGTCATGGAGATGGTAGAGCATTGCCAAATGTGCATACTTTTAATGAGCTTATGCTCGCGTTTTACCGGGATAGCCAGGTTGATATGGTGGAGGAGCTTTGGATTGAGATGGTTAGGTTGAATTGTACTCCTAAGGTTTGTAGTTATTGTATTTTGATGGCGGCATATTGTGATGAAGGTGAGATGGAGAAGGCTCGAAATGTGTGGGATGAGTTGATATTGAAGGGTTTGAAGCCGGATGTTGTTGCGTATAATACATTGATTGGTGGGTATTGTAGGATTGGGGAGGTTGCCAAGGGCGAGGAGCTTTATAGAGAAATGGGATTGAGCGGATTGGAGGGTACTTGTGTTACTTGTCAACATCTTTTGAATGGGCATTGCTTGGCTAGGGATGTTGATTCCGCTATGCTTTTGTATAATGATATGTGTAGGAAAGGGTTTAGTATTGATAGCTCGAGTATTGACTTGATGGTTCGAGTGATTTGTGATGAGAAGTCGGTCTATGAGGCTTTGGGATTCTTTCGGAATGTGATGAGAAATGGGGATTTTGTAGCTAAAGAGACTAGCTATGAGTTTGTCATTAAGGGTTTGTGCAGTGAGGGGGAGTTGGAAGAAGCGTTGAAACTTCAGGCGCAAATGGTAGGGAAGGGGTTGAAACCAAATACTCGTATTTATGATGCTTTCATTGATGGTTTTAAGAAGGATGGAAAGCCTGATGTGGCTGAAAGATTGAGGGAGGAGATGGTGGCAAATCAAACGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_84408.p1 GENE.S_Transcript_84408~~S_Transcript_84408.p1 ORF type:5prime_partial len:512 (+),score=76.87,PPR_2|PF13041.2|5.5e+02,PPR_2|PF13041.2|1e+02,PPR_2|PF13041.2|9.3e-11,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|2.7e-11,PPR_2|PF13041.2|1.7e-07,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|0.021,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|21,PPR_1|PF12854.3|96,PPR_1|PF12854.3|2.5e-05,PPR_1|PF12854.3|1.5e-11,PPR_1|PF12854.3|0.0046,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|6.6e-05,PPR|PF01535.16|2.2e+02,PPR|PF01535.16|40,PPR|PF01535.16|0.078,PPR|PF01535.16|0.00012,PPR|PF01535.16|6.3e-07,PPR|PF01535.16|0.0015,PPR|PF01535.16|4.9e+02,PPR|PF01535.16|0.0012,PPR|PF01535.16|0.019,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|0.065,PPR_3|PF13812.2|0.27,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|0.7 S_Transcript_84408:2-1537(+)
SVLLQTRKRLLPTSLTSPSPSPSTMSSPLLKRAAFIPRATTKPSFLSSSTTNSDQDDTVSKAVTALLHHRSKSRWSTLKSLFPNGFTPSQISQILLQIRNNPHLSHSFFTFALPKSPKHPSSSLPTLHCYATLIHILGRARLKSRARFLIKEALRISHLDDHDDGSHQRPKLFFRVLVDTYRVCNSSPLVFDLFLKSLLELNKIDPCVEIVRLLMPRGFYPHGKTCNALVSAACRSKGCFFGYDLYRELFRFNHDDCDSHGDGRALPNVHTFNELMLAFYRDSQVDMVEELWIEMVRLNCTPKVCSYCILMAAYCDEGEMEKARNVWDELILKGLKPDVVAYNTLIGGYCRIGEVAKGEELYREMGLSGLEGTCVTCQHLLNGHCLARDVDSAMLLYNDMCRKGFSIDSSSIDLMVRVICDEKSVYEALGFFRNVMRNGDFVAKETSYEFVIKGLCSEGELEEALKLQAQMVGKGLKPNTRIYDAFIDGFKKDGKPDVAERLREEMVANQT*

Click here to download the sequence:
Link to NCBI Protein BLAST