Transcript Information: S_Transcript_84502.p1


Annotated TAIR IDAT4G15560.1
Annotated Gene NameDeoxyxylulose-5-phosphate synthase
Annotated Gene Symbol(s)CLA1, DEF, CLA, DXS, DXPS2
Annotation TypeOrtholog
Chromosome Positionchr4:8884218-8887254 | Forward length=717
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1129.99139194874
Replicate 2148.69077187705
Replicate 3186.55736697524
Condition 2: 8 Hour
Replicate 1117.16950370019
Replicate 2110.81942488158
Replicate 3105.49843448437
Condition 3: 24 Hour
Replicate 1187.61985848682
Replicate 2149.77268157214
Replicate 3185.22216834968


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_84502.p1 GENE.S_Transcript_84502~~S_Transcript_84502.p1 ORF type:complete len:710 (+),score=159.86,DXP_synthase_N|PF13292.2|2.4e-113,Transket_pyr|PF02779.20|8.7e-45,Transketolase_C|PF02780.16|4.8e-31,TPP_enzyme_C|PF02775.17|6e-05,TPP_enzyme_C|PF02775.17|77,TPP_enzyme_C|PF02775.17|1.6e+03 S_Transcript_84502:463-2592(+)
ATGGCTCTTTGTTCTTGCTCATTTCCTGCACATTTTACACCAGCAGTATCTTCAGATCTCTTCAGGTCATGGAGAGTGGATCTCCACAATCAATCTCAACTGAAGTATCATCAGGTGAAGAGAAGGACTTTTGGAATCTGGGCATCATTGGCAGAAAGAGGGGATTATTACTCAGAAAGACCACCCACTCCCCTTTTGGATACCATCAACTATCCTATTCACTTGAAAAATCTCTCTACTAAGGAACTTAAACAACTCGCGGATGAATTGCGTTCTGAAGTGATCTTTAATGTATCTAAAACCGGGGGTCATCTTGGTTCAAGCCTTGGTGTTGTTGAGCTTACGATCGCTCTTCATTTTGTCTTCAATGCTCCTCAGGATAGGATTTTGTGGGATGTTGGTCACCAGACTTACCCTCACAAGATCCTGACTGGAAGAAGAGAAAAGATGCGAACATTGAGGCAGACTAATGGGTTGTCAGGATTTACAAAGCGTGCAGAGAGTGAATATGATTCTTTTGGTGCGGGTCATAGCTCCAACAGTATATCAGCTGGATTGGGTATGGCTGTAGGGAGGGATCTCAAGGGCAGACAAAACAATGTAGTTGCCGTGATAGGAGATGGTGCCATGACAGCAGGACAAGCTTTCGAAGCCATGAATAATGCAGGATACTTGGATTCTGACATGATTGTAATTCTCAATGACAACAAGCAGGTTTCGTTACCAACTGCCACTCTAGACGGGCCTGTTCCTCCAGTTGGAGCTCTTAGCAGTGCTTTAAGCAGATTGCAATCAAATAGACCTCTACGAGAACTTAGGGAGGTTGCCAAGGGTGTAACAAAGCAAATTGGAGGGCCCATGTACCAGCTAGCTGCCAAAGTCGACGAGTATGCTCGTGGGATGATCAGTGGTTCAGGATCAACTTTGTTTGAAGAGCTTGGACTGTACTACATTGGTCCTGTAGATGGTCATAATGTAGACGATCTTGTTGCTATTCTTAAAGAGGTTAAAAGCACAAAAACAACTGGTCCAGTGCTTATCCATGTTGTTACTGAGAAAGGAAGAGGATACCCATATGCAGAGAAGGCTGCAGACAAATATCATGGAGTAGTGAAGTTTGATCCAGCCACTGGGAAGCAATTTAAAGGGGGTTCCAATACTCAGTCTTATACAACTTACTTTGCAGAGGCCTTGGTTGCAGAAGCAGAAGCCGACAAAGATATTGTTGCAATCCATGCCGCTATGGGTGGTGGAACGGGCTTAAATCTCTTTCAGAGGCGCTTTCCATCTAGGTGCTTTGATGTTGGAATAGCTGAACAACATGCAGTAACTTTTGCTGCTGGATTAGCTTGTGAAGGTCTTAAACCATTTTGTGCAATATACTCATCTTTCATGCAAAGGGCATATGATCAGGTAGTGCATGATGTAGATTTACAAAAGCTACCAGTGAGGTTTGCTATGGACAGAGCAGGTTTGGTAGGAGCTGATGGTCCTACTCATTGTGGCTCATTTGACGTAACATTTATGGCTTGCCTTCCAAATATGATAGTAATGGCCCCGTCAGATGAGGCAGAACTTTTCCACATGGTGGCCACTGCAGCTGCTATCGATGATAGACCATCTTGCTTCCGTTACCCTAGAGGAAATGGCATTGGTGTGCCATTGCCACCAACAAACAAAGGCACACCAATCGAGATTGGGAAGGGTCGAATTTTGATAGAGGGAGAGAGAGTTGCACTACTAGGCTATGGATCAGCAGTTCAGAACTGTTTGGCTGCAGCAGCTTTGGTTGAAACCCGTGGCTTACGTGTGACTGTAGCAGATGCCCGTTTCTGTAAACCATTAGATCATGCACTTATCCGTAGTCTTGCAAAGTCACATGAGGTTCTAATTACAGTGGAAGAAGGATCAATTGGAGGTTTTGGTTCTCATGTTGCTCAATTCATGGCTCTTGATGGTCTTCTAGATGGCAAACTAAAGTGGAGACCATTGGTCTTTCCTGATCGCTACATTGAGCATGGCTCGCCAGCAGACCAGTTGGCGGAAGCTGGCCTTACACCCGGTCATATTGCTGCTACTGTGTTCAATATCCTTGGGCAAACAAGAGAGGCTCTTGAAGTCATGTCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_84502.p1 GENE.S_Transcript_84502~~S_Transcript_84502.p1 ORF type:complete len:710 (+),score=159.86,DXP_synthase_N|PF13292.2|2.4e-113,Transket_pyr|PF02779.20|8.7e-45,Transketolase_C|PF02780.16|4.8e-31,TPP_enzyme_C|PF02775.17|6e-05,TPP_enzyme_C|PF02775.17|77,TPP_enzyme_C|PF02775.17|1.6e+03 S_Transcript_84502:463-2592(+)
MALCSCSFPAHFTPAVSSDLFRSWRVDLHNQSQLKYHQVKRRTFGIWASLAERGDYYSERPPTPLLDTINYPIHLKNLSTKELKQLADELRSEVIFNVSKTGGHLGSSLGVVELTIALHFVFNAPQDRILWDVGHQTYPHKILTGRREKMRTLRQTNGLSGFTKRAESEYDSFGAGHSSNSISAGLGMAVGRDLKGRQNNVVAVIGDGAMTAGQAFEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMYQLAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVAILKEVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVVKFDPATGKQFKGGSNTQSYTTYFAEALVAEAEADKDIVAIHAAMGGGTGLNLFQRRFPSRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMIVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGIGVPLPPTNKGTPIEIGKGRILIEGERVALLGYGSAVQNCLAAAALVETRGLRVTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVFPDRYIEHGSPADQLAEAGLTPGHIAATVFNILGQTREALEVMS*

Click here to download the sequence:
Link to NCBI Protein BLAST