Transcript Information: S_Transcript_84902.p1


Annotated TAIR IDAT1G63020.1
Annotated Gene Namenuclear RNA polymerase D1A
Annotated Gene Symbol(s)NRPD1A, POL IVA, SDE4, NRPD1, SMD2
Annotation TypeHomolog
Chromosome Positionchr1:23355329-23361126 | Reverse length=1453
E-Value3E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0379325270183
Replicate 20.79505547955008
Replicate 31.0799800409316
Condition 2: 8 Hour
Replicate 11.0566634841823
Replicate 22.2170300453783
Replicate 30.9601733155397
Condition 3: 24 Hour
Replicate 10.98400376083758
Replicate 20.51044620667449
Replicate 30.68167687581395


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_84902.p1 GENE.S_Transcript_84902~~S_Transcript_84902.p1 ORF type:5prime_partial len:222 (-),score=16.80,RNA_pol_Rpb1_2|PF00623.16|8.3e-11 S_Transcript_84902:623-1288(-)
CGGAGAAAAGGTGACCTGGTTCGTGTTCGTGAGACAGATGAACTCCAATTTGGAGACCTGATATACAGGCCTTTGGATGATGGTGATATAATGCTAATAAATCGGCCTCCATCAATTCATCAACATTCAATGCTTGCTTTAAATGTGAAGATTGTTCCAATAAATTCTGTTGTCTCTATAAACCCACTGTGTTGTGCTCCCTTGCGGGAGCAAAGAGGAGGAGAACGAGCAACAGCGCATTTGTCGACGTGGCAGAGTTTAGTGGTCATGGTGGTGGTGGGAGTATTTCCAGTGGCCTTGCTCCTATTACTGCTGCCACGACGTCGTTTGGTGTTGGTAATAATCATAATAACAACATCAATGTGGGGGCCCAAGGGATTGTCCCCGTGTGGCCGGCGAATGCCTTCTTCATGTTGCCACCTAATCAACAGGCTCAGTTTTGGGCCATTCCTGCGGCTGCCGCGACTCCCGTATTCAATCTCACGGCCCGGCCCATTTCGAGTTATGGGGAAGTCCACGTGGCGGTGCCGGGGATTGGAAGCGGTGGTGGTGGTGGGAATGAGTCGAGTATGGCGCCGAGTTCTTCGAGTTCCGGGTCAGGGACTAGTAATAGTAATAGCAATACAACAGCAGCAGCAGCACAACCAACAGCAACTCAATTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_84902.p1 GENE.S_Transcript_84902~~S_Transcript_84902.p1 ORF type:5prime_partial len:222 (-),score=16.80,RNA_pol_Rpb1_2|PF00623.16|8.3e-11 S_Transcript_84902:623-1288(-)
RRKGDLVRVRETDELQFGDLIYRPLDDGDIMLINRPPSIHQHSMLALNVKIVPINSVVSINPLCCAPLREQRGGERATAHLSTWQSLVVMVVVGVFPVALLLLLLPRRRLVLVIIIITTSMWGPKGLSPCGRRMPSSCCHLINRLSFGPFLRLPRLPYSISRPGPFRVMGKSTWRCRGLEAVVVVGMSRVWRRVLRVPGQGLVIVIAIQQQQQHNQQQLNC*

Click here to download the sequence:
Link to NCBI Protein BLAST