Transcript Information: S_Transcript_85229.p1


Annotated TAIR IDAT5G19420.2
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6547945-6552981 | Reverse length=1139
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.871794321395
Replicate 28.3240561334213
Replicate 39.4409244237479
Condition 2: 8 Hour
Replicate 18.280188181744
Replicate 28.7274794143988
Replicate 37.3590426255293
Condition 3: 24 Hour
Replicate 19.7021689495771
Replicate 28.7168506062875
Replicate 39.215746994177


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_85229.p1 GENE.S_Transcript_85229~~S_Transcript_85229.p1 ORF type:complete len:1092 (+),score=238.56,RCC1|PF00415.14|0.15,RCC1|PF00415.14|1.8e-11,RCC1|PF00415.14|0.002,RCC1|PF00415.14|2.6e-11,RCC1|PF00415.14|1.8e-13,RCC1|PF00415.14|1.9e-07,RCC1|PF00415.14|2.9e-13,BRX|PF08381.7|2.1e+03,BRX|PF08381.7|2.6e-28,RCC1_2|PF13540.2|1.5e+03,RCC1_2|PF13540.2|0.0004,RCC1_2|PF13540.2|0.0001,RCC1_2|PF13540.2|0.0016,RCC1_2|PF13540.2|0.85,RCC1_2|PF13540.2|0.002,RCC1_2|PF13540.2|2.7e-05,RCC1_2|PF13540.2|1.7e+02,BRX_N|PF13713.2|1.5e-17,FYVE|PF01363.17|7.4e-14,PH_12|PF16457.1|2.9e-06,PH_12|PF16457.1|4e+03,BRX_assoc|PF16627.1|7.6e-06 S_Transcript_85229:509-3784(+)
ATGAATGCCGGTCAAGCTAGGGCTGGTCCGGTCGAGAGAGATATCGAGTTGGCAATCACTGCTCTCAAGAAGGGTACAAATCTGCTCAAATATGGGCGTAGAGGGAAGCCCAAATTTTGTCCATTCAGATTGTCTAATGATGAATCTCTTCTAGTATGGTTCTCAGGAAATGAAGAGAAACATTTAAGACTTAGTCATGTTTCCAGAATTATTCCTGGGCAACGCACTCCAATATTTCAAAGACACCCTCGACCAGAGAAGGAATACCAGTCATTTTCTCTAATATACAATGACAGGTCTTTAGATCTGATTTGCAAAGATAAAGATGAAGCTGAAGTCTGGTTCACTGGTCTCAAAGCTCTAATATCACGCTATCATCGTCGAGGAAGAGCAGATCCAAGAAGTGGAATATCCTCTGAAGCAAATAGTCCAAAAGCTCAAACCCAGAGGAGCTCTCCCTTGAGCTCTCCATTCGGGAGTGGTGATGGTTCACAAAAGGATGGAGCAGATCCCCTGTATGCTTCATATGAAAGCCCACAAAAAATTGGCTTGGAGAAGGCACTCTCTGATGTAATCTTGTATACGATACCTTCCAAAAGTTTTATACCCCCAGAATCAGTCTCCAGCTCTGTCCAGTCATTTTCATCTGGAGGTTTTGATGGCTTTAATGGACGCATCAAAGGTTCCGGCGTTGATACTTTTCGTGTTAGTCTATCAAGTGCTGTTAGCTCATCCAGCCATGGCTCTGGCCATGATGATGGGGATGCTCTAGGTGATGTTTACATCTGGGGGGAAGGTGTAGGTGATGGTATCCTGGGTGGTGGAGGACATAAGCTTGAAAGTTCCTTGGGTGTTAAGTTGGATTCTTATGGGCCTAAAGCATTGGACTCTGCTGTGCTACTGGATGTTCAAAATATAGCATGTGGTGGAAGGCATGCTGCTCTGGTTACGAAACAAGGAGAGGTTTTCACATGGGGTGAAGAGTCAGGAGGCAGACTTGGTCATGGTGTAGATTCTGATGTCTCACATCCAAAGCTTGTTGATGCCCTAAAGAATACCAATATTGAACTTGTGGCTTGTGGAGAAAATCATTCCTGTGCCGTATCACTTTCGGGTGATTTGTACATATGGGGTGGCAGAAAATACAGTTTTGGTCTTTCTGGTCAAGGTGATGAAATGAGCCATTGGATCCCCAGGAGGCTAATTGGGCCATTGGAGGGAATACATGTCTCTTCTATTTCATGTGGACCTTGGCATATGGCCATTGTAACCTCTGCGGGACAGTTGTTCACTTTTGGAGATGGGACCTTTGGTGTTCTTGGCCATGGGGATCGAAGAAGTTTCCCAACACCAAGAGAAGTTGAGTCTCTTAAGGGTCTACGAACAGTGCGTGCAGCTTGTGGTGTGTGGCATACTGCTGCAGTTGTGGAAGTTATGGTAGGGTCTTCAAGTTCAAGCAATTGCTCCTCAGGAAAACTATTCACATGGGGGGATGGGGATAAGGGACGCCTTGGGCATGGAGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCTGCTCTTGTTGAACCCAACTTTTGTCAAGTTGCCTGCGGCCACAGCTTGACTGTTGCACTTACCACCAGCGGCCAAGTTTACACAATGGGTAGCCCTGTTTATGGTCAATTGGGCAACCCTCAAGCAGATGGCAAGATACCTGTTCGAGTGGAAGGAAAACTTGCCAAAAGTTTTGTTGAAGAGATTTCTTGTGGTGCTTATCATGTTGCTGTCTTAACTTCAAGAAGTGAAGTTTATACTTGGGGGAAAGGGGCTAATGGTAGATTAGGTCATGGGGACACAGATGATAGAAATGGCCCTACATTAGTTGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACAAATTTCACCACAGCCATTTGTCTTCATAAATGGGTATCAGGTGTTGATCAGTCGCTGTGCTCTGGATGCCGTCTGCCTTTTAATTTCAAAAGAAAACGGCACAATTGTTACAACTGTGGCCTTGTCTTTTGTCATTCATGCAGCAGCAAAAAGTCTCTTAAGGCTTCAATGGCACCTAATCCCAATAAACCTTATCGTGTCTGTGATAATTGCTTCAGCAAACTACGGAAATCCTTTGAGAATGACTCATCCTCTCACTCTGCATTGAGTAGAAGAGGGAGTATGAATCAAAGATTGAACCAAAACTTGGAAAATGATGATAAGATTGGTTCACAGGGACTTGTGCAGATGGGAAAGTATTCTACAGGGGAGTCTTTTAAAGACACTGAAAGTGTGTCTTCCAAGAGGAACAAGAAACTAGAATTTAGTAGTAGTCGGGTATCTCCCCTTCCAAATGGGTTTGCTCAATGGGGTGCAGTTAACACCTCTAAGTCTGTCAACCCATTATTTGGGTCATCAAAGAAATTTTTTTCTGCTTCGCTTCCTGGCTCACGCATCGTATCTCGAGCAACTTCACCTACATCAAGGCGTTCCAGCCCACCTCGTGCTGCTACACCAAGTTCTACTATGATAGCACTTTCTTCACCAAACAAAACCGTGGAGGATGCTAAGAGGACAAATGACAATCTCAGTCAAGAAGTTCTGAAACTTAAAGCTCAGGTTGAAGAACTTACACGTAAAACACATCTTCAAGAGGTTGAGCTGGAGAAAACCTCAAAACAGCTAAAGGAAGCAGTGGCAATTGCAGGAGAAGAGACAGCAAAGTGCAAAGCGGCAAAGGAAGTGATCAAGTCACTTACTGCTCAATTGAAGGAGATGGCCGAAAGGCTGCCTCTTGGAGCAGTAAGAAGTAGCAAGACACCTACCCCTGGTTCCCCTGGACCCAATCCTTCCAGTGATGTTTCAAATGTAATGGACAGACTTAGCAGTCCAGTTGCTGCCCATGAAATAGGTTTGAATTGGTCAAACCGTCATGACATTGCGAATGGGTCAAGTGCTCCCAACCTCCTTGCCACAAATAACTCCGGGACCGGTCAAATGGAGAATTCATCCAGGATTAAGCACAGGACAACTGATGCTGATGCTAATTATGGGTCTGAATGGGTAGAGCAAGACGAGCCGGGTGTGTACATTACCCTTGTGTCAATGCCTGGGGGTATTAAAGATCTCAAACGTGTCCGCTTCAGCCGGAAGCGGTTTAGTGAGAAAGAAGCAGAGCAATGGTGGGCTGCAAACAGAGCTCGAATATATCAGCAGTATAATGTTCCTATGGTTGACAAGACTGGTATTGGTCCCGGAAGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_85229.p1 GENE.S_Transcript_85229~~S_Transcript_85229.p1 ORF type:complete len:1092 (+),score=238.56,RCC1|PF00415.14|0.15,RCC1|PF00415.14|1.8e-11,RCC1|PF00415.14|0.002,RCC1|PF00415.14|2.6e-11,RCC1|PF00415.14|1.8e-13,RCC1|PF00415.14|1.9e-07,RCC1|PF00415.14|2.9e-13,BRX|PF08381.7|2.1e+03,BRX|PF08381.7|2.6e-28,RCC1_2|PF13540.2|1.5e+03,RCC1_2|PF13540.2|0.0004,RCC1_2|PF13540.2|0.0001,RCC1_2|PF13540.2|0.0016,RCC1_2|PF13540.2|0.85,RCC1_2|PF13540.2|0.002,RCC1_2|PF13540.2|2.7e-05,RCC1_2|PF13540.2|1.7e+02,BRX_N|PF13713.2|1.5e-17,FYVE|PF01363.17|7.4e-14,PH_12|PF16457.1|2.9e-06,PH_12|PF16457.1|4e+03,BRX_assoc|PF16627.1|7.6e-06 S_Transcript_85229:509-3784(+)
MNAGQARAGPVERDIELAITALKKGTNLLKYGRRGKPKFCPFRLSNDESLLVWFSGNEEKHLRLSHVSRIIPGQRTPIFQRHPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFTGLKALISRYHRRGRADPRSGISSEANSPKAQTQRSSPLSSPFGSGDGSQKDGADPLYASYESPQKIGLEKALSDVILYTIPSKSFIPPESVSSSVQSFSSGGFDGFNGRIKGSGVDTFRVSLSSAVSSSSHGSGHDDGDALGDVYIWGEGVGDGILGGGGHKLESSLGVKLDSYGPKALDSAVLLDVQNIACGGRHAALVTKQGEVFTWGEESGGRLGHGVDSDVSHPKLVDALKNTNIELVACGENHSCAVSLSGDLYIWGGRKYSFGLSGQGDEMSHWIPRRLIGPLEGIHVSSISCGPWHMAIVTSAGQLFTFGDGTFGVLGHGDRRSFPTPREVESLKGLRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGQVYTMGSPVYGQLGNPQADGKIPVRVEGKLAKSFVEEISCGAYHVAVLTSRSEVYTWGKGANGRLGHGDTDDRNGPTLVEALKDKQVKSIACGTNFTTAICLHKWVSGVDQSLCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFSKLRKSFENDSSSHSALSRRGSMNQRLNQNLENDDKIGSQGLVQMGKYSTGESFKDTESVSSKRNKKLEFSSSRVSPLPNGFAQWGAVNTSKSVNPLFGSSKKFFSASLPGSRIVSRATSPTSRRSSPPRAATPSSTMIALSSPNKTVEDAKRTNDNLSQEVLKLKAQVEELTRKTHLQEVELEKTSKQLKEAVAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPLGAVRSSKTPTPGSPGPNPSSDVSNVMDRLSSPVAAHEIGLNWSNRHDIANGSSAPNLLATNNSGTGQMENSSRIKHRTTDADANYGSEWVEQDEPGVYITLVSMPGGIKDLKRVRFSRKRFSEKEAEQWWAANRARIYQQYNVPMVDKTGIGPGR*

Click here to download the sequence:
Link to NCBI Protein BLAST