Transcript Information: S_Transcript_85262.p1


Annotated TAIR IDAT1G02170.1
Annotated Gene Namemetacaspase 1
Annotated Gene Symbol(s)LOL3, ATMCPB1, MCP1B, ATMC1, MC1
Annotation TypeHomolog
Chromosome Positionchr1:411883-413426 | Forward length=367
E-Value2E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54684249113384
Replicate 21.8133799636313
Replicate 31.1368809914548
Condition 2: 8 Hour
Replicate 11.0224502206845
Replicate 21.225854719985
Replicate 30.72999478099251
Condition 3: 24 Hour
Replicate 11.7954698759393
Replicate 20.93138951683619
Replicate 30.86376864401082


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_85262.p1 GENE.S_Transcript_85262~~S_Transcript_85262.p1 ORF type:complete len:146 (+),score=21.58,Peptidase_C14|PF00656.18|6e-13,zf-LSD1|PF06943.8|2.7e-11,zf-LSD1|PF06943.8|6.1e+03 S_Transcript_85262:227-664(+)
ATGCTATTAGTGGACTGCTCAAACTGCAAGACCCCATTACAGCTCCCTCCTGGAGCCACCTCTATCCGCTGTGCCATCTGTCGTGCCGTCACTAGTATTGCCGATCCTCGCTCTGCCCCTCCTCCACCTTTCTCTTATTACCCTCCACCACCCCCACCACCCCACCACCACCACCCACCTCCGCCTTATTATGCTGGAGCCCCGTCTCGACAACCACCACCCCCACCGCCACATACCGCCCGTAAGAAGGCTGTGATTTGTGGGATCTCTTACAAGAACACCAGGTTTGAACTTAAGGGTTGTATCAATGATGCCAAGTGTATGAAATTCTTGCTTATCAATAAGTTCCATTTTCCTGAATCAGAGATTCTCATGCTTACTGGTAATGTCTACCATTCTCCTCTGCTGTTTACTCTCCCCCTTTTTTTTTCTCTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_85262.p1 GENE.S_Transcript_85262~~S_Transcript_85262.p1 ORF type:complete len:146 (+),score=21.58,Peptidase_C14|PF00656.18|6e-13,zf-LSD1|PF06943.8|2.7e-11,zf-LSD1|PF06943.8|6.1e+03 S_Transcript_85262:227-664(+)
MLLVDCSNCKTPLQLPPGATSIRCAICRAVTSIADPRSAPPPPFSYYPPPPPPPHHHHPPPPYYAGAPSRQPPPPPPHTARKKAVICGISYKNTRFELKGCINDAKCMKFLLINKFHFPESEILMLTGNVYHSPLLFTLPLFFSL*

Click here to download the sequence:
Link to NCBI Protein BLAST