Transcript Information: S_Transcript_85459.p1


Annotated TAIR IDAT4G36630.1
Annotated Gene NameVacuolar sorting protein 39
Annotated Gene Symbol(s)EMB2754
Annotation TypeOrtholog
Chromosome Positionchr4:17272088-17276524 | Reverse length=1000
E-Value8e-310
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.975904328955
Replicate 214.046185898418
Replicate 312.142422514669
Condition 2: 8 Hour
Replicate 119.338552709947
Replicate 218.064225609717
Replicate 319.561593066062
Condition 3: 24 Hour
Replicate 112.957679337588
Replicate 214.076901600216
Replicate 315.470042764008


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_85459.p1 GENE.S_Transcript_85459~~S_Transcript_85459.p1 ORF type:complete len:644 (+),score=147.77,Vps39_2|PF10367.5|2.9e-32,Vps39_1|PF10366.5|3.2e+03,Vps39_1|PF10366.5|4.5e-26,Vps39_1|PF10366.5|3.1e+03,Clathrin|PF00637.16|1.3e-05,Clathrin|PF00637.16|8.4e-09,Clathrin|PF00637.16|4.1e+03 S_Transcript_85459:694-2625(+)
ATGGAGCATTTTTTAGCTTCTCAAGTGGATCTTACATATGTGCTTTCATTGTACCCATCTATCATTGTTCCAAAGTCAGCTGTCCTTCCTGAGCCTGAGAAGCTGATGGATATTGGTTTGGATGCTTCAGATCTCTCTAGGGGCTCATCCAATTTGTCAGATGACATGGAATCTTCACCTCATGCACATCTTGACTTGGAGGAAAATGCTTCTGTGGAGTCCAAGATAGTTAGCCACAATACTCTTATGGCCCTTATTAAGTTCTTGCAGAAGAAAAGATTTAACATTATTGAAAAGGCAGCAGCAGAAGGGACAGATGAGGCTGTTTTTGATGCTGTTGGTGCTAACTTTAAATCTTTCAACTCCCATCGGGCCAAAAAATTAAATAAGGGTCGTGGTAGCATCCCCATAAGTTCAGGTGGTCGTGAGAGAGCTGCTGTACTGGACACTGCTCTTCTCCAAGCTCTCATTCTTACAGGGCAGTCTTCTGCTACTGTGGAATTATTGAAAGGTCTGAACTACTGTGACTTGAAAATATCAGAGGAGTTCTTGCAGAAAAGAAATCACTATACTGCGTTGCTGGAATTATACAAGTGCAATAATATGCACCATGAAGCTTTAAAGCTTTTGCTCCAATTAGTAGAAGACTCAAAGTCAAACCACTCACGTGCCGAGCTTCCCCACAAGTTCACACCTGAAATGATTATTGACTATCTAAAGCCTCTTTGTGCTACGGACCCAATGCTTGTGCTGGAATATGCAATGCTTGTTCTTGAAAGCTGTCCGACACAAACTATGGAACTATTTCTGTCCGGAAATATTTCAGCAGACTTGGTTAATTCCTATTTGAAGCAGCACGCTCCAAATATGCAGGCCACATATTTAGAACATACGCTTGCGATGAATGAAGATGGAGTCTCGGGAAGTCTGCAGAATGAAATGGTGCAAATCTATCTGTCAGAGGTACTAGATTGGTATTCTGAATTGAGTTCACAACAGAAATGGGATGAGAAAGCTTACTCTCCCACAAGGAAAAAGTTGTTGTCTGCATTAGACAATATCTCAGGTTACAATCCAGAGGCTCTTCTGAAGCGTCTTCCAACTGATGCCTTGTATGAGGAGAGGGCAATCTTACTGGGCAAACTGAACCAGCATGAACTTGCCTTGTCTCTTTATGTACACAAGCTTCATGTTCCTGAAATGGCTCTTCCGTACTGTGATCGGGTCTATGAGTCTCAAGTTCATCAATCTCCAGGGAAAACTCTTAGCAACATTTACCTTACTCTTCTGCAAATCTACTTGAATCCTAGAAGGACAACAAGAAACTTTGAGAAACGAATCAACAATTTGGTCTCAACTTCCAATGCCGAACTTAGAAGGGTCAGTTCTTCTGTCTCTGTTAGGGGTAGGGGCCGTTCAACTCGAAAAATTGCTGAAATAGAGGGTGCTGAAGACACGCGGTTTAGTCCCAGTAGCACGGATAGTGGGAAGAGTGATGTTGATGCCGATGAAACCAGCAGTGAAAAAGTCTCCAATATAATGCTCGATGAGGCACTTGATTTGTTGAGCCAAAGATGGGAAAGAATTAATGGAGCTCAGGCCCTGAAGTTCTTACCAAAAGAAACTAAGCTAAAGGATTTGCTTCCTTTCTTGGGACCCCTCTTGAGAAAATCCAGTGAAGCACATAGGAATTTTGCAGTGATCAGGAGACTGAGAGAGAGTGAAAACCTTCAGGTGAAAGATGATCTCTACAACAAGAGGAAAGCTGTTGTCAAGGTTACCAGTGATAGCATGTGCTCTCTTTGCAACAAGAAAATTGGAACCAGTGTGTTTGCTGTCTATCCAAATGGCACAACACTAGTACACTTTGTTTGCTTCAGGGACTCCCAGAGTGTGAAGGCTGTGAGAGGCTCCCAATTGAGAAAAAGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_85459.p1 GENE.S_Transcript_85459~~S_Transcript_85459.p1 ORF type:complete len:644 (+),score=147.77,Vps39_2|PF10367.5|2.9e-32,Vps39_1|PF10366.5|3.2e+03,Vps39_1|PF10366.5|4.5e-26,Vps39_1|PF10366.5|3.1e+03,Clathrin|PF00637.16|1.3e-05,Clathrin|PF00637.16|8.4e-09,Clathrin|PF00637.16|4.1e+03 S_Transcript_85459:694-2625(+)
MEHFLASQVDLTYVLSLYPSIIVPKSAVLPEPEKLMDIGLDASDLSRGSSNLSDDMESSPHAHLDLEENASVESKIVSHNTLMALIKFLQKKRFNIIEKAAAEGTDEAVFDAVGANFKSFNSHRAKKLNKGRGSIPISSGGRERAAVLDTALLQALILTGQSSATVELLKGLNYCDLKISEEFLQKRNHYTALLELYKCNNMHHEALKLLLQLVEDSKSNHSRAELPHKFTPEMIIDYLKPLCATDPMLVLEYAMLVLESCPTQTMELFLSGNISADLVNSYLKQHAPNMQATYLEHTLAMNEDGVSGSLQNEMVQIYLSEVLDWYSELSSQQKWDEKAYSPTRKKLLSALDNISGYNPEALLKRLPTDALYEERAILLGKLNQHELALSLYVHKLHVPEMALPYCDRVYESQVHQSPGKTLSNIYLTLLQIYLNPRRTTRNFEKRINNLVSTSNAELRRVSSSVSVRGRGRSTRKIAEIEGAEDTRFSPSSTDSGKSDVDADETSSEKVSNIMLDEALDLLSQRWERINGAQALKFLPKETKLKDLLPFLGPLLRKSSEAHRNFAVIRRLRESENLQVKDDLYNKRKAVVKVTSDSMCSLCNKKIGTSVFAVYPNGTTLVHFVCFRDSQSVKAVRGSQLRKR*

Click here to download the sequence:
Link to NCBI Protein BLAST