Transcript Information: S_Transcript_85540.p1


Annotated TAIR IDAT5G57160.1
Annotated Gene NameDNA ligase IV
Annotated Gene Symbol(s)ATLIG4, LIG4
Annotation TypeOrtholog
Chromosome Positionchr5:23155150-23161688 | Reverse length=1219
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.0247673806027
Replicate 25.8031604455027
Replicate 35.9773688609715
Condition 2: 8 Hour
Replicate 17.5715555197638
Replicate 26.7771398159432
Replicate 37.2383619310075
Condition 3: 24 Hour
Replicate 16.7598173667962
Replicate 25.259923696465
Replicate 35.5044852610514


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_85540.p1 GENE.S_Transcript_85540~~S_Transcript_85540.p1 ORF type:complete len:1228 (+),score=286.06,DNA_ligase_A_M|PF01068.17|2.2e-42,DNA_ligase_A_N|PF04675.10|6e-34,DNA_ligase_A_N|PF04675.10|1e+04,DNA_ligase_A_C|PF04679.11|7e+03,DNA_ligase_A_C|PF04679.11|3.2e-16,BRCT|PF00533.22|1.1e-10,BRCT|PF00533.22|1.5,BRCT_2|PF16589.1|3.8e-08,BRCT_2|PF16589.1|0.01,PTCB-BRCT|PF12738.3|1.6e-09 S_Transcript_85540:105-3686(+)
ATGTCCACCGAATTGAAGTTCAGTGTCCTTGTCAAATTCTTCCAGCACACATATGATACCAACTCCAAGCCCGAAAAACGCAAAAAAATCCGCAAATTACTCCAATATTACTGTAAACCTTCGGACTACTTCGCCGCAATTCGATTAATCCTCCCTTCTCTCGATCGCGAAAGAGGTTCCTATGGCCTCAAGGAGTCAGTCCTCGCTCTCTCTCTCCTCGACGCGCTCGGAATGTCACGAGAATCTCACGACGCCCAAAAACTCATCAATTGGCGAAAAGGCGGCGCAAAAGTAGCCGGAGAACAGGCTGGAAACTTCTCGCAAGTCGCCGTCGAGGTCCTTCAACCCCGTCAAGGCTCCATCTCCAGCGACCTCACAATTCACGAACTCAACGAGCTTCTTGATCGCCTTGCCAATGCTGAAAACCGGTCGCAAAAGACGGAGGTCTTAGGTGAGTTGATTAGAAAGACTAATTGTGAAGAAATGAAGTGGATTATTAAGATTATACTGAAAGACTTGAAATTAGGTATTTCCGAAACTACTGTGTTCAAAGAATTACATCCTGATGCTGAGGATTTGTTTAATGTGACTTGTGATTTACGTCTTGTTTGTGAGAAATTGATTGATCGTAATGTCAGGCATAAGAGACAAGATATTGAGGTAGGTAAAGCGGTTAAGCCACAGCTCGCGAAGAAAGCCACGAGCTGTGGACAAGCCTGGAAGATGCTTCATGGTAAGGATGTGGTGGTGGAGTGTAAATTTGATGGAGATAGGATTCAAATTCACAAGGATGGGGATAAGGTGAATTTCTTTTCGAGGAATTATATCGATCACCAGGAGTATGAGCATGGGATGAGGGGAGTGATACTGGAGAATCTGCTGGAGGAGAATTGTATACTTGATGGAGAGATGTTGGTTTGGGATAAGAGGGCTAATAGGTTTGCGGAGTTTGGGTCGAATCAAGAGGTTGCTAAGGCTGCTAGGGAAGGGGTCGTGAGTGATAAGGAGCTTTGTTATGTGGCTTTTGATGTGCTTTATGTTGGGGATACGAGTGTGATTCATCGGAGTTTGAGGGAGAGGCATGAGCTTCTTAGGAAGGTGGTGAGGCCGGTGAAGGGTAGGTTGGAGATCTTGTTGCCTAGTGGGAATGGGAAGGGCAATGGTAATGGGGATGTTCTTAATGCTCGTAGACGTCCTGGTGAGCCGTGTTGGTCTATTGTGGCTCACCATTTGGATGATGTCGAGAGGTTTTATAAGGAGACAATTGAGAATAGGGATGAGGGGATTGTGTTAAAGGATTTGGGTTCGAAATGGGATCCAGGTGATCGGAGTGGGAAGTGGTTTAAGTTTAAGCCTGATTATGTTCATGTCGGGTCTGATTTGGATGTGTTGATCATAGGAGGGTATTATGGTTCTGGTCGTCGAGGAGGAGAAGTAGCTCAGTTTTTGGTGGGGCTTGCTGAGAAGCCCTCAACAGATACATTCCCAAGGAGGTTTATCTCGTTCTGTAGAGTTGGTACAGGGCTTTCGGATCAAGAGCTTGATGAACTGGTGACCAAATTGAAGCCTTATTTTAGGAATTATGAGTACCCAAAGAAGGATGCTCCGAGTTTTTACCAAGTTACTAATCACTCAAAAGAGAGGCCTGATGTTTGGGTTGAGAGTCCTGAGAAATCTGTGATTGTTGCGATAACAAGTGACATTCGGACTATAAATTCTGAGGTGTTTTCTGCACCTTATAGTTTGCGGTTCCCTCGAATTGATCGGGTGAGGTATGATAAGCCCTGGCATGAGTGCCTTGATGTTCAGTCGTTTATAGATCTGGTGCATTCAAGCAATGGAACAACAATGAGAGAAGGGGAAGATGATGGAGGACTTTCCGTTGGCAGGCGGAAAAGGCATCAGAAAGGTCAAGGGAGGAAGAAAAAGTCAGTTTCTGTTCCTTCCCATTTAGCCTGGACTGATGTTTCCAGTGTAAAGGGGGAGTCAAAAATATTCTCAAATATGGTGTTTCACTTTGTCAACATGCCGTCGGATCATTCATTGGATTCGTTGCATAAGTTGGTGGTTGAGAATGGAGGCACTTTCTCCATGAATCTGAATGACACTGTTACACATTGTGTTGGGGCACAGGGTAGAGGGATCAAGTATGAGACAGCAAAACGACGTGGGTTTGATGTTATTCACTATTCTTGGGTGTTGGATTGTTGCTCCCAAAAGCAGCTTCTCCCCTTGAGACCAACGCACTATGTCTTCCTTTCAGAGCCCTCGAAGAAGAAGTTGCAAGAGGAGATTGATGAATTCTCAGATTCTTATTATTGGGACCTCAATGTTGCAGAACTGAAGCAGATTTTGTGCACTGTCAATAGCTCGGAAGATGTGAAAACTGTTGAATACTACAGGAAGAAATATAGTCCAAATGAAAAATGGTGTTGTTTTGTTGGCTGCTGCATCTATTTCCACCTCTTTTCAAAGACTCCAGCTGCTGATTGGGAAATTGTGTCAAAAATAGCACTGAGAAGGATGAGAGTTGAAGTTTCTGCAGGTGGTGGCAAAGTCGTTGATAACCCTTCTCAAGCAACCCATATAGTAGTAGCAGTGACAGCTCCAGGATATGAGCTGAACTTCAAGACTTTGTTGCAGAGTTTCCCAGAGGACCATAAACGTGTTTTAAGACGAAAAAGAGTTCATGTTGTTGGATCCCAGTGGTTGGAGGATTGCTTCAAGGAGGAGAAGAAGTTGCCTGAAGAGGCTTACAACTTAAAGCCTAGTACCATGGAAGAATCAAGCCTTAGTGAAGAAGAGGAGGCTGCAGGCGAAATGGATTGTGGAAAGTTGACAGCTTCCCCCCCTCTTGAAGAACTGCTAGAGAAGTCTGTTCCAGAAGAGCCACCAAAGGTTGTGCCCCTTTTCAGAGAATCAAAAAGAAAAAGAGGAAGAGCTGCTGGAACAGGTACTCGAAAAAGGAAAGCCACTGTCAGAAAACCTCCCACGACAAAAAGGGCCAGAGTTGGAAGCAGGCGTGCTAAACTGCGGGAGATTGCTTCTGACGATGAAATGAGCAATGAAGAAAATGATGTACCCGAAAATGCGAGCCCTGAGCTTGAAGCGCATGACCATATTTTTGAGGAACATTCTTTTGATGATAAGTCAAATGACCAGGAGAGCAAGTCGAAATCTGGTTCTGAAACTGAGAAAGACGGTTCAGTTCGAGGGTCTGAATCATTACAAAGAAATGAGGAGGCATACATGGAAGAAGAGCATAAACCAAGAGTTGATGAGAAGAGGGATCAAAGCTTAGACACTGCTAGTACAGTTTTATGCAGCAAACCGGACAAGGAAAGAGGGTACTCTGCTTTAGGGAAATCAGAGACAAAGCTTGATCCATTTCAAGCTGTGTTGGTAGAATTTATGCCACGTCTAGCGACCAAGACATTTGAACCTGCAAATCCCGCTCTCGAAGACACCTACTTACCACCAACAACGTCAAATGAGGTATCTTCTCTTGCACCAGTTGGTGAACCAGTGAAGAAGAAGAAAGTTAGCTACAGGGAACTTGCTAATTCTCTACTTAACGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_85540.p1 GENE.S_Transcript_85540~~S_Transcript_85540.p1 ORF type:complete len:1228 (+),score=286.06,DNA_ligase_A_M|PF01068.17|2.2e-42,DNA_ligase_A_N|PF04675.10|6e-34,DNA_ligase_A_N|PF04675.10|1e+04,DNA_ligase_A_C|PF04679.11|7e+03,DNA_ligase_A_C|PF04679.11|3.2e-16,BRCT|PF00533.22|1.1e-10,BRCT|PF00533.22|1.5,BRCT_2|PF16589.1|3.8e-08,BRCT_2|PF16589.1|0.01,PTCB-BRCT|PF12738.3|1.6e-09 S_Transcript_85540:105-3686(+)
MSTELKFSVLVKFFQHTYDTNSKPEKRKKIRKLLQYYCKPSDYFAAIRLILPSLDRERGSYGLKESVLALSLLDALGMSRESHDAQKLINWRKGGAKVAGEQAGNFSQVAVEVLQPRQGSISSDLTIHELNELLDRLANAENRSQKTEVLGELIRKTNCEEMKWIIKIILKDLKLGISETTVFKELHPDAEDLFNVTCDLRLVCEKLIDRNVRHKRQDIEVGKAVKPQLAKKATSCGQAWKMLHGKDVVVECKFDGDRIQIHKDGDKVNFFSRNYIDHQEYEHGMRGVILENLLEENCILDGEMLVWDKRANRFAEFGSNQEVAKAAREGVVSDKELCYVAFDVLYVGDTSVIHRSLRERHELLRKVVRPVKGRLEILLPSGNGKGNGNGDVLNARRRPGEPCWSIVAHHLDDVERFYKETIENRDEGIVLKDLGSKWDPGDRSGKWFKFKPDYVHVGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAEKPSTDTFPRRFISFCRVGTGLSDQELDELVTKLKPYFRNYEYPKKDAPSFYQVTNHSKERPDVWVESPEKSVIVAITSDIRTINSEVFSAPYSLRFPRIDRVRYDKPWHECLDVQSFIDLVHSSNGTTMREGEDDGGLSVGRRKRHQKGQGRKKKSVSVPSHLAWTDVSSVKGESKIFSNMVFHFVNMPSDHSLDSLHKLVVENGGTFSMNLNDTVTHCVGAQGRGIKYETAKRRGFDVIHYSWVLDCCSQKQLLPLRPTHYVFLSEPSKKKLQEEIDEFSDSYYWDLNVAELKQILCTVNSSEDVKTVEYYRKKYSPNEKWCCFVGCCIYFHLFSKTPAADWEIVSKIALRRMRVEVSAGGGKVVDNPSQATHIVVAVTAPGYELNFKTLLQSFPEDHKRVLRRKRVHVVGSQWLEDCFKEEKKLPEEAYNLKPSTMEESSLSEEEEAAGEMDCGKLTASPPLEELLEKSVPEEPPKVVPLFRESKRKRGRAAGTGTRKRKATVRKPPTTKRARVGSRRAKLREIASDDEMSNEENDVPENASPELEAHDHIFEEHSFDDKSNDQESKSKSGSETEKDGSVRGSESLQRNEEAYMEEEHKPRVDEKRDQSLDTASTVLCSKPDKERGYSALGKSETKLDPFQAVLVEFMPRLATKTFEPANPALEDTYLPPTTSNEVSSLAPVGEPVKKKKVSYRELANSLLND*

Click here to download the sequence:
Link to NCBI Protein BLAST