Transcript Information: S_Transcript_85801.p1


Annotated TAIR IDAT1G22860.1
Annotated Gene NameVacuolar sorting protein 39
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:8083400-8088867 | Forward length=961
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.0677642816211
Replicate 26.8835903419446
Replicate 36.9529115035174
Condition 2: 8 Hour
Replicate 17.1653311465567
Replicate 27.5393129915879
Replicate 37.9081794614481
Condition 3: 24 Hour
Replicate 17.427260386802
Replicate 26.980453965515
Replicate 36.8099519893814


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_85801.p1 GENE.S_Transcript_85801~~S_Transcript_85801.p1 ORF type:complete len:1000 (+),score=214.97,Vps39_2|PF10367.5|1.6e+04,Vps39_2|PF10367.5|2.7e-26,Clathrin|PF00637.16|3.2e+03,Clathrin|PF00637.16|0.085,Clathrin|PF00637.16|2.5e-09,CNH|PF00780.18|0.59,CNH|PF00780.18|5.7e-06,CNH|PF00780.18|1.3e+02,CNH|PF00780.18|7.2e+03,Vps39_1|PF10366.5|1.6e+04,Vps39_1|PF10366.5|3.1e+02,Vps39_1|PF10366.5|3.6e-07,Vps39_1|PF10366.5|1.4e+03 S_Transcript_85801:290-3289(+)
ATGGCGAAAGTGGAACCCATGAATTCACGAACAGTATTAAAATCTGTTGCACATTTTGACCTATCATCAAACACTTCAATCTCATCACCCTCTTGCCTCGCAATTTCCAAAATCTCTGATGATGATTCTCAGTTGCTAATCTATCTTGGTACTCACTCTGGTGCCCTCGTTTTACTAACCCTAAATTCATCATTTGAGGATCATGATGATGGTGGTAATGGTAATGATAAGGTGAAGCTTTTGAGATTTGTATCTGTGAGTCACTCTCCCATTGGTTCTATACATGTATTTGCTCAATTTGGTACTGTGTTGGTTGTTTCTGATGGATATTTGTATTTTGTTGACTTGCAATTAATGCATCCTGTGAAGAGGTTAGGTCTTTTTAAGGGTGTTAGTGCTGTTGCTAGGAGAGTTTTGAGTTCTGGTTGTCCGAGGTCGAATTCGGTACAAGAGGAGGGAGACGGGGAGGGGGAGGGTTTTGTGGGAGAGAACCAAAAAAACCTTATTAGTAGTGGTAGTAGTGTGGGCGAGCGGTTTATTAAGCGATTAGGGGGCGGGATTAGATCGAATGGAGTGAAAGGTAAGGAGTTTGAATTGGGTAGAGATGATAGTTGTGTTTTCGCTGTGGCAGCAGGGAAGAAGGTGGTGCTTGTAGAACTAGGTTCGGGTCGGGGTTTCGATGGGTCTTTGGTGGTTTTGAAAGAAATTCATGGTATTGAAGGTGTGAAATCAATGGCTTGGCTTGATGATTCGATAATCTTTGGGACCGCAAGTGGGTATAGTTTGTTGTCTTGCGGTACGGGGCAGGTTTATTTGATTTTTTCGCTTCCTGATATGGAGACTACACCTTGTGTCAGATTAATGTCGAAAGAACGTAATGTGCTTTTGCTTGTTGACAATGTGGGGATCATTGTGAATGGTCAAGGGCAGCCTGTTGGTGGCAGCTTGGTCTTTCGTCGTGCTCAGGAGTCCATTGCTGAGTTGTCGTCATATGTGGTAGTTGGTAAGGATGGGAAAATGGAATTGTATCATAAAGGATCAGGAACTTGTGTTCAGGCTATCTCTTTTGGGGGGATTGGGGTTGGTCGTTGCTTTCTTGCTGATGAGGAGGACGGGAATGGAAGATTTGTTGTTGTTGCTGCATCATCCAAGGTGCTTTGCTACCATAAAATACCCTCTGAAGAACAAATTAAAGAGCTTTTACGAAAGAAGAATTTCAAGGAAGCAATCTCATTGGCAAAGGAACTTGAAGCTGAAGGCGACTTATCTCGAGAAATGCTGTCTTTTATACATGCTCAAGTGGGATTCCTTTTGCTTTTTGACTTGCACTTCGAGGAAGCTGTTGATCATTTCTTACTATCAGAGACCATGCAGCCTTCTGAGATATTCCCATTTGTTATACAAGATCCCAATCGCTGGTCACTTCTGGTTCCAAGGAATAGGTATTGGGGTTTGCATCCACCTCCAGCACACATTGAGGCGGTTGTTGAAGATGGGTTATTGGCCATCCAAAGAGCAATCTTTTTGAAGAAAGCTGGAGTGGAGACAGCTATAAGTAGTCATTTTCTTTCGGTTCCACCAAGTCGGGCTGATCTTTTGGACTTTGCATTTAAAAACATTATTAGGTATATGCAGGTGATCCGGCATAAGGATCTTAGTCCACCCGTGAAGGAAGGAGTTGACACGCTTCTAATGTACCTGTACAGAACTCTCAATTACACCGAAGATATGGAGAAATTAGCATCTTCAGAGAATAGCTGTGTTGTAGAGGAGTTGGAAACTTTGTTGGAAGAGTCTGGGCATTTGAGAACCCTTGCTTTTCTGTATGCGAACAAAGGAATGAGTTCAAAAGCTTTAGCTATTTGGCGTGTACTAGCTCGAAACTATCCATCTGGCTTGCCCCAAGAGAATCCTGAGAGATATGATTTGAATGATACATATTCACTGCCTGTTTTGAGCAAAGAAACTGCTGCAGTTGAAGCATCTAAAATTCTTGAGGAGTTAGCCGAGGAAGAATTAGTTCTACTACATCTTGGATGGATTTCAGAAATTAGTGAGGAACTCGCAATTCAAGTTTTAACATCTGAGAAAAGGATCAGTACACTGCCACCTGATAATGTGATTGCAGCTATTGACCCAAGAAAGGTTGAGATTCTTCAAAGATATCTCCAGTGGTTGATTGAAAATCAAGGCTCAAGTGATACTCAGTTCCATACATTGTATGCTCTTTCCCTTGCCAGATCAGCTCTTGAAACTCCGGAGCAGGAAAATAACTATGGCTTTGGGAAGACTTCTCCGTCAGAGAACCCCGTCAGAGAAAGACTACAATTTTTCTTACATTCTTCTGATTTATATGATGCGGAAGAGGTGCTTGAGTTGGTTGAAGGCTCCGAATTATGGCTTGAGAAGGCTATCTTATACAGGAAATTAGGTCAAGAGACATTGGTCCTTCAGATTTTAGCTTTGAAGCTGGAAGACAGTGAAGCTGCTGAACAATATTGCGCTGAACTTGGCAGACCAGATGCCTATATGCAGTTGCTTGATATGTATTTGGATCCCCAGAATGGTAAAGAGCCTATGTTCAAGGCTGCAGTTCGCCTTCTTCACAATCATGGAGAATCTCTTGACCCGCTGCAAGTCTTAGAGAGATTGTCACCAGATATGCCTCTGCAACTTGCATCTGAAACAATATTAAGAATGCTAAGAGCTCGACATCACCATCGTCTTCAAGGAAAAATTGTGCATAGCCTTTCCAGTGCGGTTGATGTTGATGCTAGTCTTGCAATGCTGGAGGAGAGGGTGCGCCATGTGCAAATAAATGATGAGAGTCTATGTGATTCCTGCCATGCTCGTCTAGGAACCAAGCTGTTTGCTATGTATCCCGATGATTCCATTGTTTGTTACAAGTGTTACCGTCGTCAAGGGGAATCGAATTCTGTAACAGGACGCAATTTTAAGAACGATATATTGGTAAAACCTGGCTGGCTCGTGACCAGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_85801.p1 GENE.S_Transcript_85801~~S_Transcript_85801.p1 ORF type:complete len:1000 (+),score=214.97,Vps39_2|PF10367.5|1.6e+04,Vps39_2|PF10367.5|2.7e-26,Clathrin|PF00637.16|3.2e+03,Clathrin|PF00637.16|0.085,Clathrin|PF00637.16|2.5e-09,CNH|PF00780.18|0.59,CNH|PF00780.18|5.7e-06,CNH|PF00780.18|1.3e+02,CNH|PF00780.18|7.2e+03,Vps39_1|PF10366.5|1.6e+04,Vps39_1|PF10366.5|3.1e+02,Vps39_1|PF10366.5|3.6e-07,Vps39_1|PF10366.5|1.4e+03 S_Transcript_85801:290-3289(+)
MAKVEPMNSRTVLKSVAHFDLSSNTSISSPSCLAISKISDDDSQLLIYLGTHSGALVLLTLNSSFEDHDDGGNGNDKVKLLRFVSVSHSPIGSIHVFAQFGTVLVVSDGYLYFVDLQLMHPVKRLGLFKGVSAVARRVLSSGCPRSNSVQEEGDGEGEGFVGENQKNLISSGSSVGERFIKRLGGGIRSNGVKGKEFELGRDDSCVFAVAAGKKVVLVELGSGRGFDGSLVVLKEIHGIEGVKSMAWLDDSIIFGTASGYSLLSCGTGQVYLIFSLPDMETTPCVRLMSKERNVLLLVDNVGIIVNGQGQPVGGSLVFRRAQESIAELSSYVVVGKDGKMELYHKGSGTCVQAISFGGIGVGRCFLADEEDGNGRFVVVAASSKVLCYHKIPSEEQIKELLRKKNFKEAISLAKELEAEGDLSREMLSFIHAQVGFLLLFDLHFEEAVDHFLLSETMQPSEIFPFVIQDPNRWSLLVPRNRYWGLHPPPAHIEAVVEDGLLAIQRAIFLKKAGVETAISSHFLSVPPSRADLLDFAFKNIIRYMQVIRHKDLSPPVKEGVDTLLMYLYRTLNYTEDMEKLASSENSCVVEELETLLEESGHLRTLAFLYANKGMSSKALAIWRVLARNYPSGLPQENPERYDLNDTYSLPVLSKETAAVEASKILEELAEEELVLLHLGWISEISEELAIQVLTSEKRISTLPPDNVIAAIDPRKVEILQRYLQWLIENQGSSDTQFHTLYALSLARSALETPEQENNYGFGKTSPSENPVRERLQFFLHSSDLYDAEEVLELVEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAELGRPDAYMQLLDMYLDPQNGKEPMFKAAVRLLHNHGESLDPLQVLERLSPDMPLQLASETILRMLRARHHHRLQGKIVHSLSSAVDVDASLAMLEERVRHVQINDESLCDSCHARLGTKLFAMYPDDSIVCYKCYRRQGESNSVTGRNFKNDILVKPGWLVTR*

Click here to download the sequence:
Link to NCBI Protein BLAST