Transcript Information: S_Transcript_85924.p1


Annotated TAIR IDAT1G18485.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:6363172-6366084 | Forward length=970
E-Value4E-128
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1951529040679
Replicate 25.1298702813532
Replicate 35.541905916747
Condition 2: 8 Hour
Replicate 17.2485316841486
Replicate 27.3617708824322
Replicate 37.3082906074222
Condition 3: 24 Hour
Replicate 15.6387778074243
Replicate 25.4482463296835
Replicate 35.988682464663


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_85924.p1 GENE.S_Transcript_85924~~S_Transcript_85924.p1 ORF type:complete len:1015 (+),score=189.50,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|5,PPR_2|PF13041.2|9.3e-10,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|5.3e-11,PPR_2|PF13041.2|2.4e-07,PPR_2|PF13041.2|5.7e+02,PPR_2|PF13041.2|3.5e-13,PPR_2|PF13041.2|12,PPR_2|PF13041.2|3e-07,PPR_2|PF13041.2|0.025,PPR_2|PF13041.2|4.5,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|0.59,PPR|PF01535.16|0.37,PPR|PF01535.16|0.00016,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|0.0049,PPR|PF01535.16|0.0059,PPR|PF01535.16|0.19,PPR|PF01535.16|0.0027,PPR|PF01535.16|9.2e-05,PPR|PF01535.16|11,PPR|PF01535.16|5.1e-06,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.16,PPR|PF01535.16|8.2e-06,PPR|PF01535.16|0.043,PPR|PF01535.16|0.15,PPR|PF01535.16|7.2e+03,PPR|PF01535.16|9.4e+02,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|7.4e+02,PPR_1|PF12854.3|7e+02,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|7.4e-08,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|0.69,PPR_1|PF12854.3|0.00033,PPR_1|PF12854.3|2.5e-07,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|0.062,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|7.3e+02,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|48,PPR_3|PF13812.2|0.0027,PPR_3|PF13812.2|0.00035,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|47,PPR_3|PF13812.2|7,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|97,PPR_3|PF13812.2|3.5e+02,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|4.2,PPR_3|PF13812.2|0.092,PPR_3|PF13812.2|11,PPR_3|PF13812.2|7.4e+02,PPR_3|PF13812.2|5.1e+03,DYW_deaminase|PF14432.2|1.9e-18,TPR_14|PF13428.2|15,TPR_14|PF13428.2|32,TPR_14|PF13428.2|9e+03,TPR_14|PF13428.2|89,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|3.5,TPR_14|PF13428.2|1.2e+03,TPR_14|PF13428.2|2e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|6.7e+02 S_Transcript_85924:107-3151(+)
ATGTCCATCGCTGGATTGCTTCCCTCCACTCCAAGTCCACTTCACAACCCTCCTTTACTCAATCCTATACTTAGCAAGCTCACTTTAGCACCTTCACCCTTCAAACCTGAAGCTAGAACACATCAAATTTTGGCTCTTAAAGACTTACCCAACTCAAATTACAGACACCCAGAAACCCATTTATGCTCAAACCCTCAAAACACAAATGGTGTTGCTAATTCTTCTCAGCAGCTTGGTGAAGCTGAGATTGGTGACTGTGTCTATTTTCTGGACCAAATCAACATCAATGGTAGTGCTAACAATTCTTTCACTTGCAGGCAAGTTCATGGACGTCTTGTGAAAATGGGTGCTCTAAAGGCTAACGCTTTCCTTGCAAATAAACTTGTGGTGTCCTATGCAAGGAATACTGAGTTTTCGAACGATGCCCAGAAGCTATTCGATGAAATTCCTAAGAGAACAGTACCCGCTTATGCTGCTGTAATAGGCTCACTTTGTCGTTTGGAGAAGTGGGTTGATCTTATTTCCGTGTTCCGGATGATGGTGAATGATGGAATGTTACCTGACAGATATCTTGTCCCAACTATTCTGAAAGCTGCTTCTGTGATGAGATTGAAGGAAATGGGTAAAATGTTTCATGGGTATGTCATAAGAAGGGGGATTCAAGAGGATGTCTTTGTTGGGAATGCTTTTATTGACATGTATGCAAATTGTGGGGATTTGAGATTGTCAAAGAGTGTTTTTGATACAATGGATGAAAGAGATGTGGTGTCTTGGACTGCCCTTGTGGTTGCTTACATGACTCATGGTCATATCGAGGAAGCTGTTGATGCATTTCACAGGATGGAGGTGGATGGTGTGGAACCTGATTTGATTTCTTGGAGTGCGCTTGTCTCGGGCTTTGCTCAGAATGGTGACATTGAGATGGCTTTACGATTTCTGGAGGAGATGCAGGAAAAAGGGATGAAGCCAAAGGTTAATACCTGGAATGGAATAATCTCAGGCTGTGTTCAGAATGAATATTATGAAGATGCTGTAGATGCATTTGTTAAGATGTTCTGGACTTCTTTAGTGCCAAATGTTGTGACATTTGTTAGTGTCCTACCAGCTTGTGCTGCCTTGAAGGATCTAAATATAGGAAAAATGATTCATGGGCATTCTATCAAACTTGGTTTTTCAGTTGATACTCACATGGAGGGGTCTTTGATTAATATGTATTGGAAATGCGGAAGGATCGACTGTGCAGAAAGCGTATTTGCAAGAATGAGGAACAAAAGCACCGCTGTCTGGAATGAGATGATTGCAGCTTATGTCAATGGAGAGAACATAGGATCTGCTCTGAGGCTATATAATTCCATGAAAGATACTGGTCCAAAGCCTGACGAGATTACGTGTAACACAATCCTTGCTGCCTACGCCAGGAATGGGGAGAAAAACAAGGTATGCGAACTACTGTATGAAATGTCTGAAATGGATTTGCAGCCAAATCTTGTAACTTTCAATATTTTGATATCTGGATACCAGCAATCTGGCCTTAGCCATGAAGCACTGAGATTTTTCCAAGCTATGCAAGTACCATATAGTGGTAGCTTTCTATTTGGATTCATGAAAATGGCAGTTCGACCAAACCCTGTCACTGTAACCGGTGCTCTTGCTGCTTGTGCTGACTTGTGCTCATGGCGCCATGGGAAGGAATTACATGGTTATGTGGTGAGAAATTGCCTTGAGTCAAATATTTTTGTTTCAAGTGCACTGGTTGATATGTATGCAAAATGCTCTGATATAGATTCAGCAGCAGAGGTCTTCTGGAGAACAGAGAGTAGGAACACAGTTCTGTGGAATGCACTAATGGCCAGTTATATCAGAGATAGGCAACTAAACAAAGCATTTGATCTCTTCAACAGAATGCTGAAAGAAGGACTTAATCCCAGCTCTGTTACTGTTATGATACTCCTGTCTGCCTGTGGAGACATTGGAGCACTTAGATTGGGGAGAGAATTTCATGGTTGCTTTCTGAAGTGTCAACTTGACAAGCCTTTTGATTACTTTGCAAGTGCTTTAATAGACATGTACGCTAAATGTGGTAGCATAGCGGAAGCGAAACAAGTTTTTGACTCTGTGACCTCTAAAGATGCTGCAGTATGGAATTCCATGATCTCGTCTTTGTCTGCTCATGGGATGACTAAGGATGCAATTACCCTCTTTGGACGAATGGAGACGTCAGGAAGCATACCAGATGGAAGAACCTTTATTGCACTTCTCTCGGCTTGTGTACGTGATGGTTTGGTACAGGAAGGGTGGAAGTATTTCAATTTAATGGAACATACGTATCGAGTTAACCCAAGTTTGGAACACTACACTTGTATGGTAGGAATCATGGGAACTGCTGGTTTGCTTGATGAGGCTTTAGAGTTTATCCAGAAAATGCCCTTTGCCCCTGATGCCTGTATATGGTCTACTCTTCTTCGTTCTTGTAGAACCCATTCAAATCCAGACATAGGAGAGCGAGCAGCAGCAGCTCTCTTTGAACTCGAACCAAACAATGCTTCTCACTATATGATTCTCTGCAACATCTATGCATCTTCAGGGATGTGGGATTCATCAAAGAGCTTGAGAAGTTTCCTCAAGGAATATCAGCCAGTCTCTGTAACGGATTGCAGTTATATAAACATGGGTTCAACAGTACATTCATTTAAGGGAGGAAGTAATTCCTCACCATTATTGAGCAACATCATGGTTACGTGGCATAAGTTGGCTGATGAAATGAGGGGTGCAGGGCACTTTCCCCAGGATCCTGTGTTTGGAGATGAGAAGGATTTGGATCCATCTTCATGTTTGCACACAGAAAAGCTGGCTATATGCCTAGGGATAAACTGTTTGAGTGCTTCTGTGCCAATTCGTGTCTCAAAGAATCTTAGGATGTGCATCGATTGTCACACATCAGCTAAGCTCATATCCAAGATCGTTGGACGGGAAATATATGTGAAAGATGCCAGTTTCCATCACCAAATGAAGGATGGCATATGTAGTTGCCAGGACAGGTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_85924.p1 GENE.S_Transcript_85924~~S_Transcript_85924.p1 ORF type:complete len:1015 (+),score=189.50,PPR_2|PF13041.2|2.7e+02,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|5,PPR_2|PF13041.2|9.3e-10,PPR_2|PF13041.2|1.1e-07,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|2.2e-06,PPR_2|PF13041.2|5.3e-11,PPR_2|PF13041.2|2.4e-07,PPR_2|PF13041.2|5.7e+02,PPR_2|PF13041.2|3.5e-13,PPR_2|PF13041.2|12,PPR_2|PF13041.2|3e-07,PPR_2|PF13041.2|0.025,PPR_2|PF13041.2|4.5,PPR|PF01535.16|3.5e+03,PPR|PF01535.16|0.59,PPR|PF01535.16|0.37,PPR|PF01535.16|0.00016,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|0.0049,PPR|PF01535.16|0.0059,PPR|PF01535.16|0.19,PPR|PF01535.16|0.0027,PPR|PF01535.16|9.2e-05,PPR|PF01535.16|11,PPR|PF01535.16|5.1e-06,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.16,PPR|PF01535.16|8.2e-06,PPR|PF01535.16|0.043,PPR|PF01535.16|0.15,PPR|PF01535.16|7.2e+03,PPR|PF01535.16|9.4e+02,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|7.4e+02,PPR_1|PF12854.3|7e+02,PPR_1|PF12854.3|0.011,PPR_1|PF12854.3|7.4e-08,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|0.69,PPR_1|PF12854.3|0.00033,PPR_1|PF12854.3|2.5e-07,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|0.062,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|0.12,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|7.3e+02,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|48,PPR_3|PF13812.2|0.0027,PPR_3|PF13812.2|0.00035,PPR_3|PF13812.2|5.8e+03,PPR_3|PF13812.2|47,PPR_3|PF13812.2|7,PPR_3|PF13812.2|0.019,PPR_3|PF13812.2|97,PPR_3|PF13812.2|3.5e+02,PPR_3|PF13812.2|0.0025,PPR_3|PF13812.2|4.2,PPR_3|PF13812.2|0.092,PPR_3|PF13812.2|11,PPR_3|PF13812.2|7.4e+02,PPR_3|PF13812.2|5.1e+03,DYW_deaminase|PF14432.2|1.9e-18,TPR_14|PF13428.2|15,TPR_14|PF13428.2|32,TPR_14|PF13428.2|9e+03,TPR_14|PF13428.2|89,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|3.5,TPR_14|PF13428.2|1.2e+03,TPR_14|PF13428.2|2e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|6.7e+02 S_Transcript_85924:107-3151(+)
MSIAGLLPSTPSPLHNPPLLNPILSKLTLAPSPFKPEARTHQILALKDLPNSNYRHPETHLCSNPQNTNGVANSSQQLGEAEIGDCVYFLDQININGSANNSFTCRQVHGRLVKMGALKANAFLANKLVVSYARNTEFSNDAQKLFDEIPKRTVPAYAAVIGSLCRLEKWVDLISVFRMMVNDGMLPDRYLVPTILKAASVMRLKEMGKMFHGYVIRRGIQEDVFVGNAFIDMYANCGDLRLSKSVFDTMDERDVVSWTALVVAYMTHGHIEEAVDAFHRMEVDGVEPDLISWSALVSGFAQNGDIEMALRFLEEMQEKGMKPKVNTWNGIISGCVQNEYYEDAVDAFVKMFWTSLVPNVVTFVSVLPACAALKDLNIGKMIHGHSIKLGFSVDTHMEGSLINMYWKCGRIDCAESVFARMRNKSTAVWNEMIAAYVNGENIGSALRLYNSMKDTGPKPDEITCNTILAAYARNGEKNKVCELLYEMSEMDLQPNLVTFNILISGYQQSGLSHEALRFFQAMQVPYSGSFLFGFMKMAVRPNPVTVTGALAACADLCSWRHGKELHGYVVRNCLESNIFVSSALVDMYAKCSDIDSAAEVFWRTESRNTVLWNALMASYIRDRQLNKAFDLFNRMLKEGLNPSSVTVMILLSACGDIGALRLGREFHGCFLKCQLDKPFDYFASALIDMYAKCGSIAEAKQVFDSVTSKDAAVWNSMISSLSAHGMTKDAITLFGRMETSGSIPDGRTFIALLSACVRDGLVQEGWKYFNLMEHTYRVNPSLEHYTCMVGIMGTAGLLDEALEFIQKMPFAPDACIWSTLLRSCRTHSNPDIGERAAAALFELEPNNASHYMILCNIYASSGMWDSSKSLRSFLKEYQPVSVTDCSYINMGSTVHSFKGGSNSSPLLSNIMVTWHKLADEMRGAGHFPQDPVFGDEKDLDPSSCLHTEKLAICLGINCLSASVPIRVSKNLRMCIDCHTSAKLISKIVGREIYVKDASFHHQMKDGICSCQDRW*

Click here to download the sequence:
Link to NCBI Protein BLAST