Transcript Information: S_Transcript_85927.p1


Annotated TAIR IDAT5G19300.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:6495593-6497987 | Forward length=398
E-Value3E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0170567902159
Replicate 23.33023238604
Replicate 33.2187794108171
Condition 2: 8 Hour
Replicate 14.5266158692028
Replicate 24.2211035169296
Replicate 34.3234973915764
Condition 3: 24 Hour
Replicate 13.1942990009831
Replicate 23.9554765487021
Replicate 32.8553257817113


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_85927.p1 GENE.S_Transcript_85927~~S_Transcript_85927.p1 ORF type:complete len:212 (+),score=53.76,Methyltrn_RNA_3|PF02598.13|1.6e-38 S_Transcript_85927:62-637(+)
ATGGGGAAGAAGAAGAAGAAGAGATCAGAAGCTGAACTCCAAGAAGAAGACAACTTACCTCCTGAGAAGAAGAAGCTTCTGAAAGAAGAAGCTGACCTCAGCAATGGCTTCAACTCTGATAACACAAATTCGAACAAAAAGAAGAAGAAGAAACGCAGAACAGAGAAAGAGAAAGAGGACTCAAAACTCGACATTGAAAACACAAATACTATTCCAACCGTTAGCATCGCCATTCCTGCCTCCATTATCGACAACGCTCAGTCTCTCGAGCTCGCTACTCGTCTAGCTGGTCAAATTGCTAGGGCTGCCACAATCTATCGAGTTGATGAGGTGGTTGTGTTTGATAATAATGGTATTTCAATGGATGATCCAACTGTATCAAGTAAAGGGAGTAGTGATGAGGATGAAAGCAGTTCAGCGTTTTTTATAAGAATATTGCGGTACCTTGAGACACCTCAGTATCTAAGAAAGAGCCTATTTCCAAGGCATAATAGCTTAAGATTTGTGGGCATGTTACCTCCACTTGATGCGCTCATCTTCGCAAGCATGAATGGGGATCTTATAGAGAAGGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_85927.p1 GENE.S_Transcript_85927~~S_Transcript_85927.p1 ORF type:complete len:212 (+),score=53.76,Methyltrn_RNA_3|PF02598.13|1.6e-38 S_Transcript_85927:62-637(+)
MGKKKKKRSEAELQEEDNLPPEKKKLLKEEADLSNGFNSDNTNSNKKKKKKRRTEKEKEDSKLDIENTNTIPTVSIAIPASIIDNAQSLELATRLAGQIARAATIYRVDEVVVFDNNGISMDDPTVSSKGSSDEDESSSAFFIRILRYLETPQYLRKSLFPRHNSLRFVGMLPPLDALIFASMNGDLIEKV*

Click here to download the sequence:
Link to NCBI Protein BLAST