Transcript Information: S_Transcript_85927.p3


Annotated TAIR IDAT5G19300.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:6495593-6497987 | Forward length=398
E-Value3E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.50142703539806
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.48445108193139
Condition 3: 24 Hour
Replicate 10
Replicate 20.25754331336758
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_85927.p3 GENE.S_Transcript_85927~~S_Transcript_85927.p3 ORF type:complete len:88 (+),score=11.56,Methyltrn_RNA_3|PF02598.13|5.5e-17 S_Transcript_85927:748-1011(+)
ATGGGAACTGACCGTAATCTGAATCCAGGGGTATTACGTCAGGTTGTTCCATCTACTACACCTAAGAAAGAAGAGGACACATACTGGGGTTATAAAGTAAGATATGCTCCAAACTTGAGCTCTGTGATTGAGGGATGCCCATATGAGGGTGGTTATGACTATGTGATTGGTACATCAGAGCACGGCCAGGTTGTCAAGTCGTCCAAGCTTTCTATACCAACTTTCAGGGAAAGAATGCACGCGATGTGTTTAATTTGTATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_85927.p3 GENE.S_Transcript_85927~~S_Transcript_85927.p3 ORF type:complete len:88 (+),score=11.56,Methyltrn_RNA_3|PF02598.13|5.5e-17 S_Transcript_85927:748-1011(+)
MGTDRNLNPGVLRQVVPSTTPKKEEDTYWGYKVRYAPNLSSVIEGCPYEGGYDYVIGTSEHGQVVKSSKLSIPTFRERMHAMCLICI*

Click here to download the sequence:
Link to NCBI Protein BLAST