Transcript Information: S_Transcript_86186.p1


Annotated TAIR IDAT5G46840.1
Annotated Gene NameRNA-binding (RRM/RBD/RNP motifs) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19005651-19007609 | Forward length=501
E-Value9E-86
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.7171680346449
Replicate 212.370465821265
Replicate 39.6655572538331
Condition 2: 8 Hour
Replicate 111.135223075035
Replicate 29.5263555864732
Replicate 310.103465338777
Condition 3: 24 Hour
Replicate 19.1336025384565
Replicate 211.091730520987
Replicate 38.6989324634215


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86186.p1 GENE.S_Transcript_86186~~S_Transcript_86186.p1 ORF type:5prime_partial len:519 (+),score=141.33,RRM_6|PF14259.2|4.5e-06,RRM_6|PF14259.2|4.5e-11,RRM_1|PF00076.18|4.9e-05,RRM_1|PF00076.18|33,RRM_1|PF00076.18|9.8e-11,RRM_7|PF16367.1|0.00085,RRM_7|PF16367.1|0.058,RRM_5|PF13893.2|5.9,RRM_5|PF13893.2|0.26,RRM_5|PF13893.2|0.59 S_Transcript_86186:2-1558(+)
AAACAAACAATGGCAAAGAAATCAAAGGACCCAAAACCCAAACCCAAACCCAAACCCGAAAACGAACAAGAACAAGATACATCCACTTCTCCTCCTGATTCCTCAAACATTTTCAGCAAACTCTTCGGCAACGAAACCCCACAAACCGCATCCTCCACCACCCTATTCTCCTCCCACAATCCCTTCCGTCGAAAACCAACCGATAACCAAACCCAACAAAATCCTAACCAAGATACCCACATCAAGAAAAACGAAAAAAGGCCAATTCTTGATGATGGGGTTTCACCAAAACCTTCAAAAGAACCCAAATTGTATGATGGGCAAGCCTTAAATATCCAAGCAGGAAATGGGTCATCGTCAAAATTTGATCTTGATGAAGGCAAGGTGAAAAAGAAGAAGAATAAGAGGAAAAGAGATGAGATTGAGAGGGAATATGAGGAGAAGAAATACGGTGTCGTTTTGGAAGGGGAGGAAGAGAAGAAGGAAGTGGTTGCTGCTGGGAAGAAGAGAAAGGAAGTTGATAACCCAGCTGAGTTGATGCTTTCTCAAGAAGAAGGGTATGATGATGAAAGTAAGCTCTTGAGGACTGTTTTTGTTGGCAATTTGCCTTTGAAGCTGAAGAAGAAGGTTTTGTTGAAGGAGTTTAGTCAGTTTGGGGAGGTTGAGTCCGTTCGGATTCGGTCCGTCCCTACTTTGGATAGTAAGAAGCCTAAGAAGGTTCAGATTCTCAATGGGAAGATCAACGAGGCCGCCGATAGTGTCCATGCTTACATTGTTTTTAAGACAGAACAATCTGCTGAAGCCTCCTTGGGCCATAACATGTCTGTGATTGGTGGGAATCATATCCGTGTTGATAGGGCGTGTCCACCTCGCAAGAAACTGAAAGAGGACGGTGCTTCAGCTCCTCTTTATAGTAACAAGAGGACCATTTTCGTGGGGAATTTGCCATTTGATGTCAAGGATGAAGAACTCTATCAGTTATTTTGTGGTATCAAACAGCTGGAATCAAGTGTTGAAGCTGTTCGAGTTATTAGAGACCCCCATACAAGTGTTGGGAAGGGGATTGCTTATGTCTTGTTCAAAACAAGGGAAGCTGCAAATTTCGCTTGTAAGAAACACAAGTTGAAGATCCGAGACCGTGAATTAAGGATATGTCATGCCAAGTCAGATTCCCAGTCGACTCCCTCAAAGAGGAAAAACCCATTCTCGGGTGAAAATACCCCTGCCAAGAAATTTTTGTCAGAGAGCCCCGGGAGCCGATATAAGGTGAATACTAGAGGTGATACCTCCTACCAAGGTTTACGGGCAAGCAAATCCAGTGAAAAGAAGAAAACCCCTTCAAGAAGAACTCCTACACCAGTGGCCGTCAAGTCTGGAACCAAGACCAAAGAAAAAGTTAAGCAGCGGACAGGAAAAAGACCAGCCGTAGCAGCCAGAAAGGCAAAGGCGGGTTTGCAAGGTGGGGGTGTTTCTAGCCAAGCAGGACAGAAGCGGAAGATGGATGCCAGAACTCCTTCTGGTTCAAACCAGAAGAAAAAATTTAAGAAATCCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86186.p1 GENE.S_Transcript_86186~~S_Transcript_86186.p1 ORF type:5prime_partial len:519 (+),score=141.33,RRM_6|PF14259.2|4.5e-06,RRM_6|PF14259.2|4.5e-11,RRM_1|PF00076.18|4.9e-05,RRM_1|PF00076.18|33,RRM_1|PF00076.18|9.8e-11,RRM_7|PF16367.1|0.00085,RRM_7|PF16367.1|0.058,RRM_5|PF13893.2|5.9,RRM_5|PF13893.2|0.26,RRM_5|PF13893.2|0.59 S_Transcript_86186:2-1558(+)
KQTMAKKSKDPKPKPKPKPENEQEQDTSTSPPDSSNIFSKLFGNETPQTASSTTLFSSHNPFRRKPTDNQTQQNPNQDTHIKKNEKRPILDDGVSPKPSKEPKLYDGQALNIQAGNGSSSKFDLDEGKVKKKKNKRKRDEIEREYEEKKYGVVLEGEEEKKEVVAAGKKRKEVDNPAELMLSQEEGYDDESKLLRTVFVGNLPLKLKKKVLLKEFSQFGEVESVRIRSVPTLDSKKPKKVQILNGKINEAADSVHAYIVFKTEQSAEASLGHNMSVIGGNHIRVDRACPPRKKLKEDGASAPLYSNKRTIFVGNLPFDVKDEELYQLFCGIKQLESSVEAVRVIRDPHTSVGKGIAYVLFKTREAANFACKKHKLKIRDRELRICHAKSDSQSTPSKRKNPFSGENTPAKKFLSESPGSRYKVNTRGDTSYQGLRASKSSEKKKTPSRRTPTPVAVKSGTKTKEKVKQRTGKRPAVAARKAKAGLQGGGVSSQAGQKRKMDARTPSGSNQKKKFKKSK*

Click here to download the sequence:
Link to NCBI Protein BLAST