Transcript Information: S_Transcript_86303.p1


Annotated TAIR IDAT5G01660.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:244504-248442 | Reverse length=656
E-Value2.8E-183
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.9595838680494
Replicate 29.5993592225992
Replicate 39.1292859072887
Condition 2: 8 Hour
Replicate 112.138132291778
Replicate 213.052904555846
Replicate 311.980661849305
Condition 3: 24 Hour
Replicate 19.068275457579
Replicate 28.7939468598666
Replicate 38.4913016827495


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86303.p1 GENE.S_Transcript_86303~~S_Transcript_86303.p1 ORF type:5prime_partial len:701 (+),score=131.10,Kelch_1|PF01344.21|0.068,Kelch_1|PF01344.21|1.6e-11,Kelch_1|PF01344.21|8.3e-08,Kelch_1|PF01344.21|6.5e-13,Kelch_1|PF01344.21|2.7e-10,Kelch_1|PF01344.21|0.055,Dev_Cell_Death|PF10539.5|1.9e-51,Kelch_6|PF13964.2|2.2,Kelch_6|PF13964.2|4.6e-09,Kelch_6|PF13964.2|89,Kelch_6|PF13964.2|8.5e-06,Kelch_6|PF13964.2|0.0037,Kelch_6|PF13964.2|3.3,Kelch_2|PF07646.11|18,Kelch_2|PF07646.11|0.0013,Kelch_2|PF07646.11|3.8,Kelch_2|PF07646.11|8.9e-05,Kelch_2|PF07646.11|0.0034,Kelch_2|PF07646.11|8,Kelch_4|PF13418.2|6.6,Kelch_4|PF13418.2|0.001,Kelch_4|PF13418.2|3.6,Kelch_4|PF13418.2|0.0056,Kelch_4|PF13418.2|0.011,Kelch_4|PF13418.2|70,Kelch_3|PF13415.2|1.1,Kelch_3|PF13415.2|0.85,Kelch_3|PF13415.2|0.86,Kelch_3|PF13415.2|1.3e-05,Kelch_3|PF13415.2|2.5,Kelch_3|PF13415.2|2.6e+03,Kelch_5|PF13854.2|6.7e+02,Kelch_5|PF13854.2|0.83,Kelch_5|PF13854.2|99,Kelch_5|PF13854.2|1e+02,Kelch_5|PF13854.2|0.0031,Kelch_5|PF13854.2|2.8 S_Transcript_86303:1-2103(+)
AGTGACTCCATTTCCGGGGAAAAAAAAACCCAGAGTGCCTCTGTTTCGCTTCGCGCTTTCCTTCTTTTCTTTCATGTTCTTCGGTTGCTCATCATCCCTTCTTATACTTCCACTCCTTCGATGGCTACTGGGAAGAGAACACAAAAGTCTAATGGAAGTACATTTGCCAGTTCAAGTACAACAGCTTCTGCTTCTATTAGTAGAAATTTGAAGACCAGTGATTTGGGTGGTGTCATTTTCGGTTGCACAGACAGCACCATGAAAGAATGCCTTACGAAACAGCTCTTTGGGTTACCACAGCAACACTTCACATATGTGAAGAACACCTGCCCAGGTTTGACATTGTTTCTGTTCAACTACAGTAGAAGGGCACTTCATGGCATCTATGAGGCCGCTAGCTGTGGTCAGTTGAATATTGATCCATATGGTTGGACAGTTAATGGGTCACAGAGAACATCATATCCTGCACAGGTTCAAATCCGTGTTCGAAAGGATTGTCGTCCTCTGGTAGAGAACCAGTTTAAACCAGTCATCAAACGAAATTATTATTCACATAATCACTTCTCTTTTGAGCTGGACCATGCTCAAGTCAGCCAGTTAATCACTTTATTTTCAAACCAAGAGGTTGTAGTTGCACCCTCTTACTCTGTTCACAGAAATACAGGAAACTGGCAGATAGTAGTTCATCGTCAACCCGAACTCAAACATATAGAGGAAGAAGGAAACCCTACTTCTCACAACCATTCAAATGGGCATTTGAGCCCCAAAGATCCGTCTTCGTGCCTTGACGGAGTCAACCACTCGATCGGATCTGTGATTGAAAGAATGGAAAAGGATGAGACCAAGCGGATATATGAAAAATTGCAAAAGTTGGCAGTGATCTGTGAGCCATCAGATTCTTCTCTTTCAAATCAAGTACAGGAGTCAGCTGACGACCCTAAGTTGCATATTGAGGATGAAGGTTCACAAAAAATAAAAATGATACAAGATGAGAATGCTAATGAAAGCCCTTTTTCATCAGATTTTCTATCTGTCATAACTCAGTTGGTGCAAGAAGTGCAAGAACTTAAGGCATTCAAGCAAGAACAAATTGAAAGGAATAGCCAATTAGAGGAAAAGCTGGTAAAATCTGAATCAGAAGTCCAACAGTTAAGAGATCGTTGTACTATGTTGGAGTCCTTCTCTAACTATTCGGAGGCATATACATGTGGAACAATAATGGAGCCATGCATTGAGCAGCACTTGGACCTAGAAGATACTGTTCTCCTAGCAGGAGGATATAACGGGCAAGCTTGGCTATCATCATTAGATTGTTATTCTCCATCAAAGGATGTAATTAAATCTCTAAGGCCTATGAGCTCAGTTCGTTCATATGCCTCTATTGCGAAGTTGAATGGTGACGTTTATGTAATTGGAGGTGGAAATAATTCTTCGTGGTATGATACAGTGGAATGCTACAATTTTGAAAATGACAAGTGGACATCACTCCCTCGTTTGAATGGGGAAAAGGGGAGCTTAGCCGCAACAACATTGCATGACAAAATATTCGCAATTGGTGGTGGAAATGGAGTTGACTGCTTTTCCGATGTGGAGATGTTTGATCTAGATGTTGGAAGATGGATATCTGCCAGGTCAATGCTGCAAAAGAGATTTTCTCTTGCAGCAGTGGAGCTTGATGGAGCGCTTTATGCTGTTGGTGGTTTTGATGGAAAAGATTATTTGAGGTCTGCAGAACGATTCGATCCAAGAGAGCATTCCTGGAGCAGACTGGGAAGCATGAATTCACAGAGGGCCTGTCATTCCCTAATTGTCCTGAATGACAAACTGTATGCTATTGGTGGTTTTGATGGAAATACAATGGTGCCCACTGTCGAAGTATTTGATCCGCGGTATGGGAAATGGATGATTGAGGCATCAATGAACCATGCAAGGGGATATTCAGCTGCAGCAGTATTGAGCAACACCTTGTATGTAATTGGAGGGGTGGAAGATTCTGAGAAAATTGCAGAAAAGGTCGAGCAATACCAGGAGGGTCAGGGTTGGCAACGGACAAACCTCAAGGCCATTGGCAAAAGGTGTTTTGCCGCAGCAGTAGCTTTATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86303.p1 GENE.S_Transcript_86303~~S_Transcript_86303.p1 ORF type:5prime_partial len:701 (+),score=131.10,Kelch_1|PF01344.21|0.068,Kelch_1|PF01344.21|1.6e-11,Kelch_1|PF01344.21|8.3e-08,Kelch_1|PF01344.21|6.5e-13,Kelch_1|PF01344.21|2.7e-10,Kelch_1|PF01344.21|0.055,Dev_Cell_Death|PF10539.5|1.9e-51,Kelch_6|PF13964.2|2.2,Kelch_6|PF13964.2|4.6e-09,Kelch_6|PF13964.2|89,Kelch_6|PF13964.2|8.5e-06,Kelch_6|PF13964.2|0.0037,Kelch_6|PF13964.2|3.3,Kelch_2|PF07646.11|18,Kelch_2|PF07646.11|0.0013,Kelch_2|PF07646.11|3.8,Kelch_2|PF07646.11|8.9e-05,Kelch_2|PF07646.11|0.0034,Kelch_2|PF07646.11|8,Kelch_4|PF13418.2|6.6,Kelch_4|PF13418.2|0.001,Kelch_4|PF13418.2|3.6,Kelch_4|PF13418.2|0.0056,Kelch_4|PF13418.2|0.011,Kelch_4|PF13418.2|70,Kelch_3|PF13415.2|1.1,Kelch_3|PF13415.2|0.85,Kelch_3|PF13415.2|0.86,Kelch_3|PF13415.2|1.3e-05,Kelch_3|PF13415.2|2.5,Kelch_3|PF13415.2|2.6e+03,Kelch_5|PF13854.2|6.7e+02,Kelch_5|PF13854.2|0.83,Kelch_5|PF13854.2|99,Kelch_5|PF13854.2|1e+02,Kelch_5|PF13854.2|0.0031,Kelch_5|PF13854.2|2.8 S_Transcript_86303:1-2103(+)
SDSISGEKKTQSASVSLRAFLLFFHVLRLLIIPSYTSTPSMATGKRTQKSNGSTFASSSTTASASISRNLKTSDLGGVIFGCTDSTMKECLTKQLFGLPQQHFTYVKNTCPGLTLFLFNYSRRALHGIYEAASCGQLNIDPYGWTVNGSQRTSYPAQVQIRVRKDCRPLVENQFKPVIKRNYYSHNHFSFELDHAQVSQLITLFSNQEVVVAPSYSVHRNTGNWQIVVHRQPELKHIEEEGNPTSHNHSNGHLSPKDPSSCLDGVNHSIGSVIERMEKDETKRIYEKLQKLAVICEPSDSSLSNQVQESADDPKLHIEDEGSQKIKMIQDENANESPFSSDFLSVITQLVQEVQELKAFKQEQIERNSQLEEKLVKSESEVQQLRDRCTMLESFSNYSEAYTCGTIMEPCIEQHLDLEDTVLLAGGYNGQAWLSSLDCYSPSKDVIKSLRPMSSVRSYASIAKLNGDVYVIGGGNNSSWYDTVECYNFENDKWTSLPRLNGEKGSLAATTLHDKIFAIGGGNGVDCFSDVEMFDLDVGRWISARSMLQKRFSLAAVELDGALYAVGGFDGKDYLRSAERFDPREHSWSRLGSMNSQRACHSLIVLNDKLYAIGGFDGNTMVPTVEVFDPRYGKWMIEASMNHARGYSAAAVLSNTLYVIGGVEDSEKIAEKVEQYQEGQGWQRTNLKAIGKRCFAAAVAL*

Click here to download the sequence:
Link to NCBI Protein BLAST