Transcript Information: S_Transcript_86415.p1


Annotated TAIR IDAT3G54890.1
Annotated Gene Namephotosystem I light harvesting complex gene 1
Annotated Gene Symbol(s)LHCA1
Annotation TypeHomolog
Chromosome Positionchr3:20339706-20340922 | Reverse length=241
E-Value4E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2444699836899
Replicate 24.4302790276134
Replicate 30.88880655824581
Condition 2: 8 Hour
Replicate 10.85644137819811
Replicate 20.3593871267426
Replicate 30.25681744102387
Condition 3: 24 Hour
Replicate 10
Replicate 25.0970821215882
Replicate 31.0129335102456


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86415.p1 GENE.S_Transcript_86415~~S_Transcript_86415.p1 ORF type:5prime_partial len:249 (+),score=-18.00,Chloroa_b-bind|PF00504.17|6.1e-48 S_Transcript_86415:3-749(+)
ACGTTGAAGTGCTTGCGTTCGCAGCTCATAGACAACATAGTCAAGATGTCAGTTGCCTTCGGCGCTTCAACACGGCCCCTTGTGGCACGACCTGCGGCAGCACGTCAAAATGTGAGAGCACATGCGAAGGCTGGCAACTGGTTGCCGGGCGCAGACTCGCCAAAGCACCTGGATGGCTCCCTGCCAGGCGACTACGGCTTTGACCCATTGGGCCTGGGCGAGCAGAAGCTCGACCGGCTGCGCGAGAGCGAGCTCATCCACGGCCGGTGGGCGATGCTCGGCGTCGTCGGCGCCCTCGTGCCCGAGCTCCTCGGCTTCGGCGACTGGTTCGAGGCCCCGCTGTGGGCCGTCAACGGCGGCACGCCGACCTACTTTGGCGTGCCCGTGCCGCTGGGCATCAAGACGCTGCTCCTCGTGGAGCTCGTCGCGATGGCGGGCGTCGAGCTGCTGCGGGCGCAGCAAAGCGAGCCCCTCAAGCGCGCCTACCCCGGTGGCGCGTTCGACCCAATGGGCTTTGGCAAGGACGGCAGCAAGCTCGAGAACATGAAGCTCAAGGAGGTCAAGAACGGCCGCCTCGCGATGGTGGCCTTCATCGGCTTCATCGGCCAGCACGCGGCGACCGGCCAGGGCCCGCTCGGCGCGCTCGGCTCCCACTTGGCCGACCCCGCGAACAACAACTTTGCGACCAACGGCGTGTCGCTGCCGCCGTCGGCGTTCCCCTTCCTGTACTCTGGCGAGATGTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86415.p1 GENE.S_Transcript_86415~~S_Transcript_86415.p1 ORF type:5prime_partial len:249 (+),score=-18.00,Chloroa_b-bind|PF00504.17|6.1e-48 S_Transcript_86415:3-749(+)
TLKCLRSQLIDNIVKMSVAFGASTRPLVARPAAARQNVRAHAKAGNWLPGADSPKHLDGSLPGDYGFDPLGLGEQKLDRLRESELIHGRWAMLGVVGALVPELLGFGDWFEAPLWAVNGGTPTYFGVPVPLGIKTLLLVELVAMAGVELLRAQQSEPLKRAYPGGAFDPMGFGKDGSKLENMKLKEVKNGRLAMVAFIGFIGQHAATGQGPLGALGSHLADPANNNFATNGVSLPPSAFPFLYSGEMF*

Click here to download the sequence:
Link to NCBI Protein BLAST