Transcript Information: S_Transcript_86416.p1


Annotated TAIR IDAT3G54890.1
Annotated Gene Namephotosystem I light harvesting complex gene 1
Annotated Gene Symbol(s)LHCA1
Annotation TypeHomolog
Chromosome Positionchr3:20339706-20340922 | Reverse length=241
E-Value6E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.79611542156523
Replicate 22.1685647855677
Replicate 30
Condition 2: 8 Hour
Replicate 10.091134146654415
Replicate 20
Replicate 30.091093365833254
Condition 3: 24 Hour
Replicate 10.28006260885377
Replicate 21.2591006431304
Replicate 30.64671908731067


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86416.p1 GENE.S_Transcript_86416~~S_Transcript_86416.p1 ORF type:complete len:234 (+),score=-10.83,Chloroa_b-bind|PF00504.17|1.1e-46 S_Transcript_86416:52-753(+)
ATGTCGGTTGCATTCGGCGCTTCTACCCGCCCGGTCGCGGCACGGCCTGTCCTTTCACGCTCAGGCGTTGTCGCGCGGGCAAAAGCTGGCAACTGGCTGCCCGGTGCAGACTCACCAAAGCATCTGGATGGCTCGCTGCCAGGCGACTACGGCTTTGACCCACTTGGCCTGGGCGAGCAGAAGCTGGACCGCCTGCGGGAGGGCGAGCTCATCAACGGCCGATGGGCGATGCTCGGCGTTGTTGGCGCCCTGGTGCCGGAGCTGCTTGGCTTTGGCGACTGGTTCGAGGCACCCCTGTGGGCCGTCAACGGCGGCACGCCGACCTACTTTGGCGTGCCAGTGCCGCTGGACATCAAGACGATCATCCTTGTGGAGATCGTGGCCATGGGCGGCGTTGAGCTGCTACGGGCGCAGGAAAGCGAGCCCCTGAAGCGCGCATACCCTGGCGGCGCGTTTGACCCCATGGGCTTTGGCAAGGACGGCAGCAAGCTCGAGAACATGAAGCTCAAGGAGGTCAAGAACGGCCGCCTCGCGATGGTGGCCTTCATCGGCTTCATCGGCCAGCACGCGGCGACCGGCCAGGGCCCGCTCGGCGCGCTCGGCTCCCACTTGGCCGACCCCGCGAACAACAACTTTGCGACCAACGGCGTGTCGCTGCCGCCGTCGGCGTTCCCCTTCCTGTACTCTGGCGAGATGTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86416.p1 GENE.S_Transcript_86416~~S_Transcript_86416.p1 ORF type:complete len:234 (+),score=-10.83,Chloroa_b-bind|PF00504.17|1.1e-46 S_Transcript_86416:52-753(+)
MSVAFGASTRPVAARPVLSRSGVVARAKAGNWLPGADSPKHLDGSLPGDYGFDPLGLGEQKLDRLREGELINGRWAMLGVVGALVPELLGFGDWFEAPLWAVNGGTPTYFGVPVPLDIKTIILVEIVAMGGVELLRAQESEPLKRAYPGGAFDPMGFGKDGSKLENMKLKEVKNGRLAMVAFIGFIGQHAATGQGPLGALGSHLADPANNNFATNGVSLPPSAFPFLYSGEMF*

Click here to download the sequence:
Link to NCBI Protein BLAST