Transcript Information: S_Transcript_86420.p2


Annotated TAIR IDAT1G61520.1
Annotated Gene Namephotosystem I light harvesting complex gene 3
Annotated Gene Symbol(s)LHCA3
Annotation TypeOrtholog
Chromosome Positionchr1:22700152-22701149 | Forward length=273
E-Value2.2E-101
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8718624721992
Replicate 23.9132776585194
Replicate 31.1843958952771
Condition 2: 8 Hour
Replicate 10.78258313090396
Replicate 20
Replicate 30.52148862642156
Condition 3: 24 Hour
Replicate 10
Replicate 25.1288136288982
Replicate 30.61705307413128


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86420.p2 GENE.S_Transcript_86420~~S_Transcript_86420.p2 ORF type:5prime_partial len:327 (+),score=-41.95,Chloroa_b-bind|PF00504.17|3.2e-48 S_Transcript_86420:1-981(+)
CGCGCTCACCAGAGAGACGTGACAAGCTCGACACGACCGTGTAGACGCTCGCTTTGCACCCGCGCTGTAGCCATGATGAAGGGGATGCGCACTCGCGCGCCCACACAGGCGCCAGCGGCAGCCGGGCGCTGCGTGCGAGCACGCGCCGAGGGCGCCCAGAAGACGGGCGCACCGAAAAAGGAAGGCAAGAAGGAGGAGTCCGAAGAGGACAAGACGCCGTCCACCGCCTTCCAGAACGAGCCCAGCGGGCCGCCGTCCGGCCAGCTCGGCGCCGTGATTGGCACCTCGAAGGACCGCTCCAACGAGAGCCTCTTCTTCCCTACGACGCAGTCCCTCGCGTACCTCGACGGCTCCGCCCCGGGTGACTTTGGCTTTGACCCCCTCGGCTTGTCCGACCCCGAGGGCGCGGGCGGCTTTGTCAACCCCAAGTGGCTCCAATACGGCGAGATCATCAACGGCCGGTGGGCGATGCTCGGCGCCGCGGGCTGCGTAGCGCCCGAGGTGCTGGGCAAGCTCGGCGTCATCCCCCAAGCCACCAACATCCTGTGGTGGAAGACCGGCGTCTTCCCGCCGGCGGGCGCCGCCGACATCTACTGGATGAACCCCTGGGCGCTGTTCTGGATCGAGGTCGTGCTGCTGCAGTTTGCGGAGCTCCGGCGCTGGCAGGACTACCGGAACCCGGGCAGCATGGGCAAGCAGTTCTTCCTCGGCTTCGAGAACGTCCTCGGCGGCTCCGGCGAGCCCGCCTACCCCGGCGGCCCGGTGTTCAACCCCGCGGGCATGGCGAAGGAGGGCGAGGGCGCCAAGGTGATGCGCACGCGGGAGCTCAAGAACGGCCGCCTCGCGATGATCGCGATGCTCGGCTTCGCCGGCCAGGCGTGCGTCACGGGCAAGGGCCCCGTGCAGAACCTGATCGACCACATCAGCGACCCCGTGAACAACAACCTGCTGACGAACCTCGGCCACATCACCGGCAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86420.p2 GENE.S_Transcript_86420~~S_Transcript_86420.p2 ORF type:5prime_partial len:327 (+),score=-41.95,Chloroa_b-bind|PF00504.17|3.2e-48 S_Transcript_86420:1-981(+)
RAHQRDVTSSTRPCRRSLCTRAVAMMKGMRTRAPTQAPAAAGRCVRARAEGAQKTGAPKKEGKKEESEEDKTPSTAFQNEPSGPPSGQLGAVIGTSKDRSNESLFFPTTQSLAYLDGSAPGDFGFDPLGLSDPEGAGGFVNPKWLQYGEIINGRWAMLGAAGCVAPEVLGKLGVIPQATNILWWKTGVFPPAGAADIYWMNPWALFWIEVVLLQFAELRRWQDYRNPGSMGKQFFLGFENVLGGSGEPAYPGGPVFNPAGMAKEGEGAKVMRTRELKNGRLAMIAMLGFAGQACVTGKGPVQNLIDHISDPVNNNLLTNLGHITGN*

Click here to download the sequence:
Link to NCBI Protein BLAST