Transcript Information: S_Transcript_86541.p1


Annotated TAIR IDAT3G10920.1
Annotated Gene Namemanganese superoxide dismutase 1
Annotated Gene Symbol(s)MSD1, MEE33, ATMSD1
Annotation TypeOrtholog
Chromosome Positionchr3:3418015-3419581 | Forward length=231
E-Value5E-137
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1117.81797421825
Replicate 2108.85841653204
Replicate 3103.86846502639
Condition 2: 8 Hour
Replicate 1192.66897779576
Replicate 2188.68479286769
Replicate 3188.14196045786
Condition 3: 24 Hour
Replicate 199.743131215734
Replicate 2126.06745189343
Replicate 3123.7456553626


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86541.p1 GENE.S_Transcript_86541~~S_Transcript_86541.p1 ORF type:5prime_partial len:288 (+),score=43.90,Sod_Fe_C|PF02777.14|9.3e+03,Sod_Fe_C|PF02777.14|3.5e-35,Sod_Fe_N|PF00081.18|9.7e+03,Sod_Fe_N|PF00081.18|2.1e-34 S_Transcript_86541:3-866(+)
TCATCACAGCAATTCTTAAACCGGGGGCCGTCGTCACTGACTCACTCTTCCACTTCTTATATAAAACCCCCAATCCACCATATTATCAAACAAACACAAACACTCAACAAAAAAAAAAACATCAATACCAACAACAAATCAACAATGGCTCTTGGAACTCTAATGGCGAGAAAAACCCTAGCAGCTTCAACAACTACAGCCACAAAAGCAGGAGTTGTAGGGTTCATCCAATCGAAGAGGTCATTACAGACCTTCGCCCTCCCCGACCTTCCGTACGACTATGGCGCTCTTGAGCCCGCCATTAGCGGCGAAATCATGCAGCTCCATCACCAGAAGCATCACCAGACTTACATCACTAATTACAACAAGGCTCTCGAGCAACTTGAAGGTGCTATGAACAAAGGCGATGCTTCTACGGTCGTCAAGCTCCAGAGCGCTATCAAGTTCAATGGTGGAGGTCATGTCAATCACTCAATTTTCTGGAAGAATCTTGCTCCAATTCAGGAAGGCGGTGGTGAGCCTCCAAAGAGCTCACTGGGTTGGGCTATTGATTCCAACTTTGGTTCTTTGGAAGCCCTTATCCAGAAGATGAATGCAGAAGGTGCTGCCGTACAAGGCTCAGGATGGGTGTGGTTAGGAGTTGACAAGGAGATGAAAAAGCTTGTGGTTGAAACTACTGCAAATCAGGACCCACTGGTGACTAAAGGTGCAAGTTTGGTTCCTTTGCTTGGTATAGATGTGTGGGAGCATGCATACTACCTGCAGTACAAGAACGTCAGACCAGATTACCTGAAGAACATTTGGAAGGTTATGAATTGGAAATATGCCAGCGAGGTTTACGAAAAAGAATGCCCTACCCACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86541.p1 GENE.S_Transcript_86541~~S_Transcript_86541.p1 ORF type:5prime_partial len:288 (+),score=43.90,Sod_Fe_C|PF02777.14|9.3e+03,Sod_Fe_C|PF02777.14|3.5e-35,Sod_Fe_N|PF00081.18|9.7e+03,Sod_Fe_N|PF00081.18|2.1e-34 S_Transcript_86541:3-866(+)
SSQQFLNRGPSSLTHSSTSYIKPPIHHIIKQTQTLNKKKNINTNNKSTMALGTLMARKTLAASTTTATKAGVVGFIQSKRSLQTFALPDLPYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLEGAMNKGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPIQEGGGEPPKSSLGWAIDSNFGSLEALIQKMNAEGAAVQGSGWVWLGVDKEMKKLVVETTANQDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVYEKECPTH*

Click here to download the sequence:
Link to NCBI Protein BLAST