Transcript Information: S_Transcript_86680.p1


Annotated TAIR IDAT1G18660.4
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:6421433-6425489 | Forward length=491
E-Value7E-218
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 148.452123898277
Replicate 244.671462567999
Replicate 343.007700021757
Condition 2: 8 Hour
Replicate 112.575384805567
Replicate 29.3177596396387
Replicate 310.108546286898
Condition 3: 24 Hour
Replicate 151.166572464567
Replicate 258.598803539669
Replicate 357.048624149304


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86680.p1 GENE.S_Transcript_86680~~S_Transcript_86680.p1 ORF type:5prime_partial len:485 (+),score=81.60,LON_substr_bdg|PF02190.12|4.3e-22,zf-C3HC4_3|PF13920.2|8.5e-09,zf-C3HC4|PF00097.21|3.8e-08,zf-C3HC4_2|PF13923.2|5.4e-08,TPR_11|PF13414.2|8.2e-06,TPR_11|PF13414.2|62,TPR_11|PF13414.2|54,TPR_11|PF13414.2|5e+03,zf-RING_2|PF13639.2|3.1e-07,zf-RING_5|PF14634.2|8.1e-07,zf-C3HC4_4|PF15227.2|1.8e-06 S_Transcript_86680:1-1455(+)
GAGAATTCGTTGATCGGCGACTTCTTCGACGGCATCGACGATGTTGAAGAGTTCCTCTGTGCGAATGAGGGAGGGGTTTCCATGTCAATTGATAGATTCCGTCAGGTTTTCGAGTTTGTACAGTCCGGTAATCAAGCCTTTCGTGCTTCTCGTTTTGAAGAGGCAATTAATTGTTACTCAACAGCAAATGTCATGAAACCAGGCGATCCTATCATTCTGAGCAATAGATGTGCTGCATATATAAGGTTGAGCCAATTTTTGAAAAGCAGGCCATCTACTGCTTCTGAAAGCAGTCCGTTATATGGGCTGGATCCTACAATTCATGCCGAGCTTGCATTGAAGGATGCTGAAAAAGTCATCAGCCTCAGAAACAATTCTGTAAAATCACTCATTTTGCATGCCGATGCTCTTTTCTTGCTAGAAAGATATAAGCTGGCGCGTGATGTTGCTTTGTCTGGCCTTCAGCTTGATCCTCTCAGCAATCATCTGCAGGCCCTTCTTCGGATTTTGGAGAAAATACTTACTGGTTCGATGGGGGCCAAAAGCCGTGTGAAACCAGAACGTAATGATGATTTTGATTGTACCCTTTGCCTGAAGCTGCTATATGAGCCAATAACAACCCCCTGTGGGCATTCTTTTTGTCGTTCATGTCTATTTCAGTCAATGGATCAAAGTAATAAATGTCCCCTTTGCCGAACTGTGTTATTTATTACTCCAAGGACATGTGCTATCAGTGTGACACTGAACAACATTATACAGAAAAACTTCCCAGAGGAACATGCTGAGAGGAAATCAGAGAATGATGGTTTGACAAAGCTCGGGGTTGATTTGGTGCCTCTTTTTGTCATGGATGCTGTCCTCCCTTGTGAGAAAATGATGCTAAATATATTTGAACCTCGCTACAGACTTATGGTTAGGAGGATAATGGAAGGAAATCACCGGATGGGAATGGTCATACTTGATTCTACAACAGGACATATTGCTGATTTTGCATGTGAAGTAGAGATAACAGAATGTGAGCCATTTCCTGATGGGCGTTTCTACATTGAGGTTGAAGGTCGTCGAAGATTTCGCATCCTTCGATCCTGGGATCAAGATGGGTATCGTGTGGCAGAAGTAGAATGGGTACAAGATATACATCCACCAGAAGGAACAAGAGAGAAAACAGATCTGCAGGAACTGACCAGTAATGCTGCCGAATATGCTCGATTGTGGATGGTGAGGGCGAAGGAAGCAGCAAGACAAGATCGTAGGCGACTTGCAGAACTCCTCCATGTGGAAACAATGATGCCCTCACCAGCTGATCCCGAGCGCTTCAGTTTTTGGTTAATGACCCTTTCAAAGAGGAGGCCATCTGAGAGATTAGAATTATTGCGTTTAAGGGATACAAAAGAGAGGATAACGCGTGGACTTATATACCTTAGACAAGAAGAACAAGGCTGTCGGCTTCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86680.p1 GENE.S_Transcript_86680~~S_Transcript_86680.p1 ORF type:5prime_partial len:485 (+),score=81.60,LON_substr_bdg|PF02190.12|4.3e-22,zf-C3HC4_3|PF13920.2|8.5e-09,zf-C3HC4|PF00097.21|3.8e-08,zf-C3HC4_2|PF13923.2|5.4e-08,TPR_11|PF13414.2|8.2e-06,TPR_11|PF13414.2|62,TPR_11|PF13414.2|54,TPR_11|PF13414.2|5e+03,zf-RING_2|PF13639.2|3.1e-07,zf-RING_5|PF14634.2|8.1e-07,zf-C3HC4_4|PF15227.2|1.8e-06 S_Transcript_86680:1-1455(+)
ENSLIGDFFDGIDDVEEFLCANEGGVSMSIDRFRQVFEFVQSGNQAFRASRFEEAINCYSTANVMKPGDPIILSNRCAAYIRLSQFLKSRPSTASESSPLYGLDPTIHAELALKDAEKVISLRNNSVKSLILHADALFLLERYKLARDVALSGLQLDPLSNHLQALLRILEKILTGSMGAKSRVKPERNDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDQSNKCPLCRTVLFITPRTCAISVTLNNIIQKNFPEEHAERKSENDGLTKLGVDLVPLFVMDAVLPCEKMMLNIFEPRYRLMVRRIMEGNHRMGMVILDSTTGHIADFACEVEITECEPFPDGRFYIEVEGRRRFRILRSWDQDGYRVAEVEWVQDIHPPEGTREKTDLQELTSNAAEYARLWMVRAKEAARQDRRRLAELLHVETMMPSPADPERFSFWLMTLSKRRPSERLELLRLRDTKERITRGLIYLRQEEQGCRLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST