Transcript Information: S_Transcript_86771.p2


Annotated TAIR IDAT5G65490.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26178003-26180309 | Reverse length=643
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4181836448856
Replicate 22.024109133717
Replicate 30
Condition 2: 8 Hour
Replicate 11.1738746963559
Replicate 20
Replicate 30.58667470472426
Condition 3: 24 Hour
Replicate 11.0020588757153
Replicate 20.62377463054167
Replicate 33.2395286391892


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86771.p2 GENE.S_Transcript_86771~~S_Transcript_86771.p2 ORF type:complete len:109 (+),score=5.34,SGT1|PF07093.7|1.1e-18 S_Transcript_86771:240-566(+)
ATGGCGGAAAATTACCAAGTAGATCCAGACGATCCATTCTTCGGCAAGCACTCAAGACTCCCAGACGACACCGTTTTCTACACCATCTACTCCGGCTGTTCTCTCTCCACCGCCACAAAAACGACCGAACAACAGCTCCAGTCTCTCCACCTCGAAATCCTCAAGACTCTCTCTCCTCTAACCTCCGATTACATATGGCAACACGAAACCTTCTCTCTCTCCCTGTCTTCTTCCGACCAAATCCCTCACCTTCACGGCAAGGTCAAGTTCGGCGACAACCTCGACGACGAATGCCGCCTTTCATCTGCCACGTTGGCTCAACCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86771.p2 GENE.S_Transcript_86771~~S_Transcript_86771.p2 ORF type:complete len:109 (+),score=5.34,SGT1|PF07093.7|1.1e-18 S_Transcript_86771:240-566(+)
MAENYQVDPDDPFFGKHSRLPDDTVFYTIYSGCSLSTATKTTEQQLQSLHLEILKTLSPLTSDYIWQHETFSLSLSSSDQIPHLHGKVKFGDNLDDECRLSSATLAQP*

Click here to download the sequence:
Link to NCBI Protein BLAST