Transcript Information: S_Transcript_86916.p1


Annotated TAIR IDAT5G58230.1
Annotated Gene NameTransducin/WD40 repeat-like superfamily protein
Annotated Gene Symbol(s)MSI1, MEE70, ATMSI1
Annotation TypeOrtholog
Chromosome Positionchr5:23556112-23557994 | Forward length=424
E-Value6.5e-310
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.930211929912
Replicate 220.047686998397
Replicate 321.336561183369
Condition 2: 8 Hour
Replicate 126.06991509495
Replicate 226.825261132412
Replicate 327.755529902505
Condition 3: 24 Hour
Replicate 118.77534482681
Replicate 219.001509471504
Replicate 318.9608343186


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_86916.p1 GENE.S_Transcript_86916~~S_Transcript_86916.p1 ORF type:complete len:427 (+),score=85.94,CAF1C_H4-bd|PF12265.4|1.8e-26,CAF1C_H4-bd|PF12265.4|5.3e+03,CAF1C_H4-bd|PF12265.4|3.4e+03,WD40|PF00400.28|0.44,WD40|PF00400.28|6,WD40|PF00400.28|2.9e-06,WD40|PF00400.28|2.3,WD40|PF00400.28|0.16 S_Transcript_86916:197-1477(+)
ATGGGCAAAGACGAGGAAGAAATGAGGGGGGAAATCGAGGAGAGATTAATCAACGAGGAGTACAAGATATGGAAGAAGAACACTCCCTTTTTGTACGATTTGGTGATAACACATGCACTTGAGTGGCCTTCTCTCACTGTCGAGTGGCTCCCTGACCGTGAGGAGCCACCTGGCAAGGACTACTCCGTACAGAAGATGATTTTGGGGACCCACACTTCGGAAAACGAGCCTAATTATCTTATGTTGGCTCAAGTTCAGCTCCCTCTTGAAGATGCTGAGAATGATGCCCGTCATTATGATGATGATCGGTCTGATTTCGGTGGCTTTGGCTCTGCCAATGGCAAGGTACAAATTATACAACAAATAAATCATGATGGAGAGGTAAATCGAGCTCGCTACATGCCTCAAAACCCCTTTGTAATTGCCACCAAGACAGTGAGCGCAGAAGTATATGTATTTGACTATAGTAAACACCCGTCTAAGCCACCTCTTGATGGTGCGTGCAATCCTGATTTAAGGTTGCGAGGCCATAGCACTGAAGGATATGGTCTGTCATGGAGTAAATTCAAGCAGGGACATTTACTGAGTGGTTCTGATGATGCTCAGATTTGTCTCTGGGACATCAATGCAACACCTCGGAATAAAACGCTGGATGCCATGCAAATATTTAAGGTTCATGAAGGTGTTGTTGAAGATGTGGCATGGCATTTAAGGCACGAGTACTTGTTTGGATCAGTTGGAGATGATCAATATCTGCTTATATGGGACCTTCGAACTCCATCAGTTACCAAGCCTGTCCAGTCTGTGATTGCTCATCAAAGTGAGGTGAACTGCTTGGCTTTCAATCCCTTTAACGAATGGGTTGTGGCAACGGGGTCTACCGACAAGACTGTTAAGTTATTTGATCTAAGAAAAATCAACACTGCACTGCATACTTTTGATTGTCACAAAGAAGAGGTTTTCCAAGTTGGGTGGAATCCTAAGAACGAGACTATCTTGGCCTCTTGCTGTCTTGGTAGGAGACTCATGGTGTGGGATCTTAGCAGGATTGATGAGGAACAGACACCAGAGGATGCTGAAGATGGCCCACCTGAATTGCTCTTTATTCATGGAGGCCACACGAGCAAAATCTCTGACTTCTCATGGAATCCATGTGAAGACTGGGTGGTTGCTAGTGTGGCAGAGGACAACATTCTTCAAATCTGGCAAATGGCTGAGAATATATACCATGATGAGGATGATTTAGCAGGGGATGAGGCCACCGCCATAAAGGGTTCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_86916.p1 GENE.S_Transcript_86916~~S_Transcript_86916.p1 ORF type:complete len:427 (+),score=85.94,CAF1C_H4-bd|PF12265.4|1.8e-26,CAF1C_H4-bd|PF12265.4|5.3e+03,CAF1C_H4-bd|PF12265.4|3.4e+03,WD40|PF00400.28|0.44,WD40|PF00400.28|6,WD40|PF00400.28|2.9e-06,WD40|PF00400.28|2.3,WD40|PF00400.28|0.16 S_Transcript_86916:197-1477(+)
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSDFGGFGSANGKVQIIQQINHDGEVNRARYMPQNPFVIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPRNKTLDAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVTKPVQSVIAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKINTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLAGDEATAIKGS*

Click here to download the sequence:
Link to NCBI Protein BLAST