Transcript Information: S_Transcript_87110.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46563797585107
Replicate 20.56418977334156
Replicate 30.42197377311065
Condition 2: 8 Hour
Replicate 10.43052604947106
Replicate 20.78286415159205
Replicate 31.118866832563
Condition 3: 24 Hour
Replicate 10.6762211578515
Replicate 20.15251555569547
Replicate 30.74681692720398


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87110.p1 GENE.S_Transcript_87110~~S_Transcript_87110.p1 ORF type:3prime_partial len:743 (+),score=124.75,UBN2_3|PF14244.2|5.5e-32,rve|PF00665.22|1.4e+04,rve|PF00665.22|2.2e-18,gag_pre-integrs|PF13976.2|1.2e-08,Retrotrans_gag|PF03732.13|4.4e-08 S_Transcript_87110:3255-5480(+)
ATGGAAATTGCTTTAGCAACGAAGAGGAAATTAGGTTTTGTGACTGGAACAGTTGCTCGAAGCGATACAGATGCAGTGAAAGCAGACCAGTGGGATACATGTAACAGTATGGTGATTGCTTGGCTTTTAAATTCAATGTGTGAATCTGTTAGGAAATCTGTGCTGTATATTGACTCTGCTAGCACAATGTGGACACATCTAGAAACTAGATTTTCTATTAGTAATGGTTCTCGAAAATACAGGATTAATAAGGACATATATGACTTGAGACAGAATGGATTGTCTGTGAGTGAATTTTATACAAAAATGCGATGTTTGTGGGAAGAACTTGATGCTATGAGTACTTTGCCTAAGATTACAGAGATAACTCCTGAAATCAGTGTGTTTCTTAAGGCTCTTAATCAACAGCAGGAAGAACATAGACTGTTTCAATTTTTGAATGGTTTGGATCATGTTTACAATACACAGAGGAGCAACTTGTTGTTCATGAATCCTTTACCCTCTATAGACACTGCCTGTAATTCTTTGCAACAAGAAGAGAACCAAAGAGACCTGTTAGCAGTGCCATCTACAGAAGTTGAGTCTTCTGCATTGTACAGTAAGGGGGAGACATTGAAGTGTGCTGGTTGTGGTCGTTCTGGCCACACTAGAGATAGATGTTGGGCAGAAAATGGCTATCCTCCTTGGCATCCTATGGCTAAAAAATTTCCTCAAAAACCAAGGGGTAGAGATTACAATGGTACTAAGGGCCATTCAGCTGTACAAAATTGGCCTCGATATGTTGTTCACAAACAGAAACCAAACAGGACTGCTGCCAATGTGGTTCATAGTGCTGCTGATATGCACTCTTCTCCTGATACTGTTGTTTTCACTAAACAGCAACTGGAAACATTTTTCAGAAATATGGCTTCTACTTCTAAAGTCTCTAAAGTGTCTGATTCTGAGGATGAGCTGGATCACAGCTTTGCAGGTATGCTCTATTGTCATAGTGCTGCTTTTTCCTCATCTCGGTGGATATTAGATTCTGGTGCTTTTGATCACATGACATATAATCTATCCACTTTAAGTGATGCTTGTCCTGCACCTTTGAAGCCTAAAATCAATTTGCCTAATGGTGATTCCTCTGTCATTACTCATACTGGTTCTTTGCGGTTGCATAATGGTTTGTTGTTGACTGGTGTTCTCTGTGTTCCATCTTTTAAACACAATTTGTTATCCATTCAGAAACTTACTGCCACAAATAATTGCTATGTCACATTTTATCCTTCCATTTGTGTCATTCAGGACTATGCTACTCACAAAGTTAGAGCTGTGGGTAGATCTTCTGGGGGACTTTACTATTTGGTCGAATCTCCTCCAAACACTGAGCTTCTATTCAACTCTGTTCCTTCTCTGTTAACACAGAAATCCTCTTGTACTGCTTTGTCTTCTGCATCATGTAATACTGATTCTGTTTCTTCTGTTAATCTTTGGCATAATAGACTAGGACATGTCCCTGTACATCGACTGCAATATGTTCCTGGTTTATCATTACCTTCTGTAAATACCACAAATGAAATATGTGTCACTTGTCCTATGGCCAAATTCACAAAACTGCCTTATGTTACTTCTGACTCTGTGTCCTTGGCTCCTTTTGACCTTATACACATTGATATATGGGGCCCCTATAAGGTTCTTACCAGGGAGAAATTCAGTTTTTTCCTCACTATTGTGGCTGATTTTTCTAGAGCTACATGGGTATATTTGTTGAGGTACAAGTCCCAGTCATTATCTGTCCTTCAGACATTCTATCACTTTGTGTCTACTCATTTTCAAGCCAAAATCAAGACTATCAGATCTGACAATGCCCTGGAATTTGGGAGTGGTCCATGTACTGATTTTTTCTCTTCTGTGGGGATAGTTCATCAAACATCTTGTGTGGATATACCTCAACGAAATGGAAGGGTGGAAAGGAAACATAGACACTTGCTTAAGGTGTCTAGAGCTTTGCGATTTCAGGCTGATTTACCTTTGCAGTATTTAGGTGACAGTGTTTTGACAGCAGCTTATATCATTAATAGATTGCCAACTCCAGTTCTTGGGAACAAAACTCCATTTGAAATGTTGTTTCACAAGCCTCCTGATTACTCTCATATGAAGACCTTTGGTTGTTGTTGTCTTTATTTTACAATACCGCAAGTGCACGGTGCTATTGTAGTTAGTACCGGCAAGTACGGGTCGATCCCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87110.p1 GENE.S_Transcript_87110~~S_Transcript_87110.p1 ORF type:3prime_partial len:743 (+),score=124.75,UBN2_3|PF14244.2|5.5e-32,rve|PF00665.22|1.4e+04,rve|PF00665.22|2.2e-18,gag_pre-integrs|PF13976.2|1.2e-08,Retrotrans_gag|PF03732.13|4.4e-08 S_Transcript_87110:3255-5480(+)
MEIALATKRKLGFVTGTVARSDTDAVKADQWDTCNSMVIAWLLNSMCESVRKSVLYIDSASTMWTHLETRFSISNGSRKYRINKDIYDLRQNGLSVSEFYTKMRCLWEELDAMSTLPKITEITPEISVFLKALNQQQEEHRLFQFLNGLDHVYNTQRSNLLFMNPLPSIDTACNSLQQEENQRDLLAVPSTEVESSALYSKGETLKCAGCGRSGHTRDRCWAENGYPPWHPMAKKFPQKPRGRDYNGTKGHSAVQNWPRYVVHKQKPNRTAANVVHSAADMHSSPDTVVFTKQQLETFFRNMASTSKVSKVSDSEDELDHSFAGMLYCHSAAFSSSRWILDSGAFDHMTYNLSTLSDACPAPLKPKINLPNGDSSVITHTGSLRLHNGLLLTGVLCVPSFKHNLLSIQKLTATNNCYVTFYPSICVIQDYATHKVRAVGRSSGGLYYLVESPPNTELLFNSVPSLLTQKSSCTALSSASCNTDSVSSVNLWHNRLGHVPVHRLQYVPGLSLPSVNTTNEICVTCPMAKFTKLPYVTSDSVSLAPFDLIHIDIWGPYKVLTREKFSFFLTIVADFSRATWVYLLRYKSQSLSVLQTFYHFVSTHFQAKIKTIRSDNALEFGSGPCTDFFSSVGIVHQTSCVDIPQRNGRVERKHRHLLKVSRALRFQADLPLQYLGDSVLTAAYIINRLPTPVLGNKTPFEMLFHKPPDYSHMKTFGCCCLYFTIPQVHGAIVVSTGKYGSIP

Click here to download the sequence:
Link to NCBI Protein BLAST