Transcript Information: S_Transcript_87460.p2


Annotated TAIR IDAT4G24840.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:12796525-12800926 | Reverse length=756
E-Value8.7E-101
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.64909759110196
Replicate 20.35874454565065
Replicate 30.29988188753822
Condition 2: 8 Hour
Replicate 11.3870172563989
Replicate 21.8188494829046
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.46064657675503
Replicate 30.82022908634524


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87460.p2 GENE.S_Transcript_87460~~S_Transcript_87460.p2 ORF type:complete len:246 (+),score=32.15,COG2|PF06148.7|3e-38,COG2|PF06148.7|1.5e+03 S_Transcript_87460:149-886(+)
ATGGCGTCCCCAGATCTAGCCCCACCACCACCCCCGCGAACCCCAACAGACCTATTCGGGGACCCAATCGACGACTCTAACCCATTATGGTTCAAGAAGGACCTCTTTCTCTCTCCAGATTTCGACCCGGAATCCTACATTTCGGACCTCCGTACCTTCGTCCCTTTCGAAACTCTCCGATCGCAGCTCCAATCTCACCTCTCCTCTCTCAAACACGAGCTCGTCGATCTAATCAATCGCGATTACAATGACTTCGTCAATCTCAGCACCAAGCTTGTCGACGTGGATTCTGCTGTTGCTCGTATGCGGGCCCCATTGTCGGATCTCAGAGAAAAGATTCTCGCTTTTAGGGTTTCTGTTGAGAGTTCTTTGGTTTCTATTAAGGAGGGCTTGAGGCAAAGAGCTGATGCTGCTAATGCTAGGGAGGTTCTCGAACTCTTGCTTGATGCCTTCCATGTTATCTCTAAGATTGAGAAATTAATAAAAGAGCTACCTAGTGTACCTGCTGATTGGTCAAATGGTGACCTGCATGTGTCAGAGAAGAGTCATCTGAGCAATGGAATGTCAGTGCAACAATCTGAGAGCGAATCAAATGTAAGAGAGACTCAGAGCATGCTTCTGGAGAGAATTGCCAGTGAAATGAACAGGTTGAAGTTCTATATGGCTCATGCGCAGTACAGGACCTACCTTTCATTCAGAACATTGAGAAGAGATTTCAGAGTGCTAGTCTTTTATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87460.p2 GENE.S_Transcript_87460~~S_Transcript_87460.p2 ORF type:complete len:246 (+),score=32.15,COG2|PF06148.7|3e-38,COG2|PF06148.7|1.5e+03 S_Transcript_87460:149-886(+)
MASPDLAPPPPPRTPTDLFGDPIDDSNPLWFKKDLFLSPDFDPESYISDLRTFVPFETLRSQLQSHLSSLKHELVDLINRDYNDFVNLSTKLVDVDSAVARMRAPLSDLREKILAFRVSVESSLVSIKEGLRQRADAANAREVLELLLDAFHVISKIEKLIKELPSVPADWSNGDLHVSEKSHLSNGMSVQQSESESNVRETQSMLLERIASEMNRLKFYMAHAQYRTYLSFRTLRRDFRVLVFY*

Click here to download the sequence:
Link to NCBI Protein BLAST