Transcript Information: S_Transcript_87606.p1


Annotated TAIR IDAT5G65560.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:26201012-26203759 | Reverse length=915
E-Value1E-294
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.2635114223708
Replicate 25.0879494285697
Replicate 35.9092031941332
Condition 2: 8 Hour
Replicate 16.0276868549447
Replicate 25.8440747467041
Replicate 35.8944843887244
Condition 3: 24 Hour
Replicate 15.8847441239968
Replicate 24.9952890821337
Replicate 35.0444088810232


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87606.p1 GENE.S_Transcript_87606~~S_Transcript_87606.p1 ORF type:5prime_partial len:980 (+),score=139.78,PPR_2|PF13041.2|5.3e+02,PPR_2|PF13041.2|4.8e-09,PPR_2|PF13041.2|2.3e-13,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|9.3e-18,PPR_2|PF13041.2|5.7e-16,PPR_2|PF13041.2|3.9e-07,PPR_2|PF13041.2|1.6e-17,PPR_2|PF13041.2|6.5e-11,PPR_2|PF13041.2|1.8e-17,PPR_2|PF13041.2|4.4e-13,PPR_2|PF13041.2|1.1e-14,PPR_2|PF13041.2|6e-14,PPR_2|PF13041.2|9.2e-14,PPR_2|PF13041.2|2.5e-09,PPR_2|PF13041.2|5.8e-05,PPR_2|PF13041.2|2.8e-05,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|2.7e-08,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|2.7e-09,PPR_1|PF12854.3|3e-11,PPR_1|PF12854.3|3.3e-10,PPR_1|PF12854.3|2.3e-12,PPR_1|PF12854.3|1e-12,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|2.4e-09,PPR_1|PF12854.3|1.3e-09,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|4.2e-06,PPR_1|PF12854.3|9.1e-08,PPR_1|PF12854.3|4.1e-07,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|1.6e-05,PPR_1|PF12854.3|0.047,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|2.5e+02,PPR_1|PF12854.3|0.37,PPR|PF01535.16|3.8e+03,PPR|PF01535.16|2e+02,PPR|PF01535.16|0.41,PPR|PF01535.16|2e-05,PPR|PF01535.16|5.2e-05,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|4e-08,PPR|PF01535.16|6.5e-06,PPR|PF01535.16|3.4e-09,PPR|PF01535.16|0.006,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|8.2e-07,PPR|PF01535.16|8.9e-08,PPR|PF01535.16|0.00067,PPR|PF01535.16|0.00028,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|0.00037,PPR|PF01535.16|8.2e+03,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.13,PPR|PF01535.16|0.00024,PPR|PF01535.16|5.7,PPR|PF01535.16|0.005,PPR|PF01535.16|1.4e+04,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.088,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|6.2e-05,PPR_3|PF13812.2|0.035,PPR_3|PF13812.2|1.9e-05,PPR_3|PF13812.2|15,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.00053,PPR_3|PF13812.2|9.9e-05,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|0.0029,PPR_3|PF13812.2|0.035,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|9.1e-05,PPR_3|PF13812.2|0.66,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.15,MRP-S27|PF10037.5|3.7e+02,MRP-S27|PF10037.5|4.6,MRP-S27|PF10037.5|8.7,MRP-S27|PF10037.5|7.3,MRP-S27|PF10037.5|5.2,MRP-S27|PF10037.5|4.5e+02,TPR_19|PF14559.2|1.1e+04,TPR_19|PF14559.2|6.2e+03,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|36,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|22,TPR_19|PF14559.2|3.9e+02,TPR_19|PF14559.2|1.3e+03 S_Transcript_87606:1-2940(+)
CACCAACTCTATTCATCTAAGCCGCCCTCTTTCTTTCCCCCAAATTCCCCCTCTCTCTCCGGCGACCACCCCACCTTCGCCGCCGGCGATTCCGATCCAATCTCCGGCGATTATTCCTTCATGCATGGATTCCTCACCGGCCTCCGATGTTCCTCTGCCACCACTATTATGATTATCATTACAAAATCACCTGGTCAGTTCCATTTCCATTTCCCTTTCCATTGTCATCTTTTCTCTCTCATACGTCACCACCACTCTCTCTCCACTATAACAACCACCACCGCCACTTCCTCCTCCGATGTTGACCCCCCTGACGTCACCTCCAACCTCTTCTCTCTCCTCTCCCTCCCAAACTGGCAAAAGAGCCCCTCTCTCAAAAACCTCCTCCCTTCAATCACTCCCTCCCACGTCTCTTCTCTTTTCAACATTTACTCTCACTCTCTCTCTCCTCAATCCGCCCTCAACTTCTTCTACTTCCTTCCTCATCACCTCCCTCACTTCCGACACAACGCCTACTCTCACTCCTCCCTCCTTTCGCTCTTGATTCAGTCCCGAAACCTCGCCATTGCCGAAAAGATTCGCATTTCCATGATCAGGTCTTGCTGTATGACCCCCGACGAAACTATGTTTGTTTTAGATACCCTGCTCAGGTTGAACCAACTGGATGAATCCGAATTCGGTTTCCGTATGAATCTTAGGTGTTATAATTTGTTGCTGATGGCCTTAGCCAGGTTTCTTTTTATTGATGATATGATTCGTGTTTATAACATGATGCTCAATGATAATATTTCGCCTAATATTTATACCTTCAACACCTTGATTAATGGTTATTGTAAATTGGGGAATGTGGTCCAGGCTCAGCTTTATTTCTCTAAGATTTTACAGGCTGGATTGAGTCCTGATACTTTTACATATTCGTCGTTGATCTTAGGTCATTGTAGGAATAAGGATTTGGGTAGTGCTTTTAAGATTTTTAGGGTTATGCCTCAGAAAGGTAGTAGGAGAAATGTGGTTTCTTATAATTATATCATTCATGGTTTATGTGATGAAGGTAGGGTTGATGAGGGTTTTGAATTGTTTTCTAAGATGGAAGTTGAGGACAATTGTCGGCCTAATGTGCGGACGTATACTGTCCTTATATCGGCCTTGTGTAGAGTGGGAAGGGGAGTAGAGGCGATGGCATTGTTTCGGGACATGAGTGAAAAGGGTTGTGAGCCGAATAGTTATACTTGCACCATTTTAATTGATTATATGTGTAAAGAGGGTAGAGTTGATGAAGGTAGGAAACTGTTTGATGAGATGTCGGAGAAGAGGTTGGCACATAGTGTTGTGACTTATAATGCTTTGATTGATGGGTTTTGCAAGGAAGGAAGGGTTGAGGATGCGTTTGAGATTTTGAAACTGATGGAGTTGAATAAATGTTACCCTAATGTTCGGACTTACAATGAGCTGATTTGTGGTCTTTGTAGGATAAGAAAGGTGCCGATTGCCATGACTTTGCTTGACAAGATGGTTGAGCTTAAACTAGCTCCCACTTTGATTACCTATAACTCGTTGATCGATGGCCAGTGTAAAGATGGCCATATAGAGAATGCATTTCGATTGCTTAGTTTGATGAAAGAAAGTGACGTGGAACCTGATGAATGGACTTATAGTGCTATCATAGATTCTCTTTGCAAGAAAGGAAGGGTCCAAGAGGCTCAAGCTATTTTCGATAGTCTTAAGGAGAAAGGGGTCAGGGCAAATAAAGTAACGTTCACTGCCCTAATCCATGGTTATTCCAAAGCAGGAAAGATCAATTCTGCTTATGCATTATTTGAGAGGATGCTAGAAGAGAATTGCTCACCAAACTCTTTTGTGTACAATGTCTTGATTGATGGTTTGTTTGGAGAGGATAAAATGGAGGATGCTTTGGTATTGCTAGGGAAAATGGTAGAGGCAAATGTAGTACCAGATGTCTTCACATATTCTATAATCATCAATGGACTGCTAAAAGGTGGTTCTTTTGACCATGCTTATAGGGTTCTAGAGCAGATGATTACTTTGGGATACAAGCCTGATGCGTACACTTACACTTCATTTGTTCGTGCTCATTGTAGAGAAGGAAAATTGGAAGAGGCAGAACACTGGATGACGAAAATGACTGAAGGCGGTATTGTACCCGATGCAGTGACTTATACTGTCCTAATTGACGGATATGGATGCATAAGATCACTAAGTCAAGCTTTTGGTGTCCTCAAGTGCATGATGGATGCTGGTTGTGAGCCTTCTCAGTTTACTTATTCTGTTTTGATTAAGCATCTTTTGATTAATAAGTGGTCTATTCATGATGGAAATGCAACCGATACCGATTTAAATCGAAAAGCCATTGCTAGTGATGTTGCTTGTGTTTGGAAGATAGTGGACTTTGAAACGGTCATGGAACTAATCTACAAGATGAATGTGCATGGATGTGTCCCTAGCATTGGCACTTACACTACTATTGTTTGTGAATTATGCAAGCAAGGAAGTATTCAGCAAGCTCAGCTGCTGGTTGATTACATGAAAAACAGAGGAATTCATCCTCAGGAAGGTATCACTAACTCAATTGTTAAATGCTGCTGCCGGTTAGGGATGCTTGAAGAAGCATCAAGACTGATCAATTACATGGTTGAGTTGGGTGAGTTACCACACTTAGAGTCGTACATACTGCTTATTTGTGGACTTTATGATAAAGGGGATCGGGAACAAGCAGAGGAAGTATTCAATAGCCTACTTTGCTGTGGGTATAATAATGATGAAATAGCTTGGAAACTTCTGATTGATGGCTTGCTGAAGAGGGGCTTTGTTGATAGTTGTTCTGAGCTAGTGAAAATAATGGAGAGTAATGGTTGCCATCCCACCCCTCAGACATATTCCATGTTGATTGAGGGTCTTCTAGGTGGGTCAGAGGGGAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87606.p1 GENE.S_Transcript_87606~~S_Transcript_87606.p1 ORF type:5prime_partial len:980 (+),score=139.78,PPR_2|PF13041.2|5.3e+02,PPR_2|PF13041.2|4.8e-09,PPR_2|PF13041.2|2.3e-13,PPR_2|PF13041.2|4e-06,PPR_2|PF13041.2|9.3e-18,PPR_2|PF13041.2|5.7e-16,PPR_2|PF13041.2|3.9e-07,PPR_2|PF13041.2|1.6e-17,PPR_2|PF13041.2|6.5e-11,PPR_2|PF13041.2|1.8e-17,PPR_2|PF13041.2|4.4e-13,PPR_2|PF13041.2|1.1e-14,PPR_2|PF13041.2|6e-14,PPR_2|PF13041.2|9.2e-14,PPR_2|PF13041.2|2.5e-09,PPR_2|PF13041.2|5.8e-05,PPR_2|PF13041.2|2.8e-05,PPR_2|PF13041.2|0.01,PPR_2|PF13041.2|3.1,PPR_2|PF13041.2|2.7e-08,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|2.7e-09,PPR_1|PF12854.3|3e-11,PPR_1|PF12854.3|3.3e-10,PPR_1|PF12854.3|2.3e-12,PPR_1|PF12854.3|1e-12,PPR_1|PF12854.3|3.4e-07,PPR_1|PF12854.3|2.4e-09,PPR_1|PF12854.3|1.3e-09,PPR_1|PF12854.3|1.1e-08,PPR_1|PF12854.3|4.2e-06,PPR_1|PF12854.3|9.1e-08,PPR_1|PF12854.3|4.1e-07,PPR_1|PF12854.3|1.5e-05,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|1.6e-05,PPR_1|PF12854.3|0.047,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|2.5e+02,PPR_1|PF12854.3|0.37,PPR|PF01535.16|3.8e+03,PPR|PF01535.16|2e+02,PPR|PF01535.16|0.41,PPR|PF01535.16|2e-05,PPR|PF01535.16|5.2e-05,PPR|PF01535.16|2.8e-06,PPR|PF01535.16|4e-08,PPR|PF01535.16|6.5e-06,PPR|PF01535.16|3.4e-09,PPR|PF01535.16|0.006,PPR|PF01535.16|1.5e-06,PPR|PF01535.16|8.2e-07,PPR|PF01535.16|8.9e-08,PPR|PF01535.16|0.00067,PPR|PF01535.16|0.00028,PPR|PF01535.16|4.5e-05,PPR|PF01535.16|0.00037,PPR|PF01535.16|8.2e+03,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.13,PPR|PF01535.16|0.00024,PPR|PF01535.16|5.7,PPR|PF01535.16|0.005,PPR|PF01535.16|1.4e+04,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|13,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|0.088,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|6.2e-05,PPR_3|PF13812.2|0.035,PPR_3|PF13812.2|1.9e-05,PPR_3|PF13812.2|15,PPR_3|PF13812.2|2e-05,PPR_3|PF13812.2|0.00053,PPR_3|PF13812.2|9.9e-05,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|0.0029,PPR_3|PF13812.2|0.035,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|9.1e-05,PPR_3|PF13812.2|0.66,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|0.15,MRP-S27|PF10037.5|3.7e+02,MRP-S27|PF10037.5|4.6,MRP-S27|PF10037.5|8.7,MRP-S27|PF10037.5|7.3,MRP-S27|PF10037.5|5.2,MRP-S27|PF10037.5|4.5e+02,TPR_19|PF14559.2|1.1e+04,TPR_19|PF14559.2|6.2e+03,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|36,TPR_19|PF14559.2|1.5e+02,TPR_19|PF14559.2|22,TPR_19|PF14559.2|3.9e+02,TPR_19|PF14559.2|1.3e+03 S_Transcript_87606:1-2940(+)
HQLYSSKPPSFFPPNSPSLSGDHPTFAAGDSDPISGDYSFMHGFLTGLRCSSATTIMIIITKSPGQFHFHFPFHCHLFSLIRHHHSLSTITTTTATSSSDVDPPDVTSNLFSLLSLPNWQKSPSLKNLLPSITPSHVSSLFNIYSHSLSPQSALNFFYFLPHHLPHFRHNAYSHSSLLSLLIQSRNLAIAEKIRISMIRSCCMTPDETMFVLDTLLRLNQLDESEFGFRMNLRCYNLLLMALARFLFIDDMIRVYNMMLNDNISPNIYTFNTLINGYCKLGNVVQAQLYFSKILQAGLSPDTFTYSSLILGHCRNKDLGSAFKIFRVMPQKGSRRNVVSYNYIIHGLCDEGRVDEGFELFSKMEVEDNCRPNVRTYTVLISALCRVGRGVEAMALFRDMSEKGCEPNSYTCTILIDYMCKEGRVDEGRKLFDEMSEKRLAHSVVTYNALIDGFCKEGRVEDAFEILKLMELNKCYPNVRTYNELICGLCRIRKVPIAMTLLDKMVELKLAPTLITYNSLIDGQCKDGHIENAFRLLSLMKESDVEPDEWTYSAIIDSLCKKGRVQEAQAIFDSLKEKGVRANKVTFTALIHGYSKAGKINSAYALFERMLEENCSPNSFVYNVLIDGLFGEDKMEDALVLLGKMVEANVVPDVFTYSIIINGLLKGGSFDHAYRVLEQMITLGYKPDAYTYTSFVRAHCREGKLEEAEHWMTKMTEGGIVPDAVTYTVLIDGYGCIRSLSQAFGVLKCMMDAGCEPSQFTYSVLIKHLLINKWSIHDGNATDTDLNRKAIASDVACVWKIVDFETVMELIYKMNVHGCVPSIGTYTTIVCELCKQGSIQQAQLLVDYMKNRGIHPQEGITNSIVKCCCRLGMLEEASRLINYMVELGELPHLESYILLICGLYDKGDREQAEEVFNSLLCCGYNNDEIAWKLLIDGLLKRGFVDSCSELVKIMESNGCHPTPQTYSMLIEGLLGGSEGS*

Click here to download the sequence:
Link to NCBI Protein BLAST