Transcript Information: S_Transcript_87799.p1


Annotated TAIR IDAT5G06490.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1977996-1978589 | Reverse length=197
E-Value3.7E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8410517246652
Replicate 22.9568687035845
Replicate 31.9963786482248
Condition 2: 8 Hour
Replicate 12.6381926165525
Replicate 22.0757385335829
Replicate 32.3073855654877
Condition 3: 24 Hour
Replicate 10.7882174455369
Replicate 21.8691803361936
Replicate 33.1202529160968


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87799.p1 GENE.S_Transcript_87799~~S_Transcript_87799.p1 ORF type:complete len:194 (+),score=35.16,zf-RING_2|PF13639.2|6.9e-14,zf-RING_11|PF17123.1|2.7e-10,zf-RING_11|PF17123.1|6.3e+03,zf-rbx1|PF12678.3|3e-09,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|9.4e-08,zf-C3HC4|PF00097.21|3.7e-07,zf-RING_5|PF14634.2|6.2e+03,zf-RING_5|PF14634.2|4.1e-06 S_Transcript_87799:569-1150(+)
ATGATGGGTAATATGAATCTGATAACAACTATAATAGGATTTGGGATGAGTTCTATGTTTATTATGTTTATCTGCACAAGGCTAATCTGTGGGAGGCTATGGCGATCAGAGTCAAGGCCAATGATTTATACTGGACCACCAATTGATCTTGAGCAGCCAGAGCAAAGGATGACTAATGGACTTGAATCAACTGTGGTTGCTGCAATCCCCACTATGAAGTTTCATCGCGATGCTTTCAGCTCCCTTGAAGATGCACAGTGTTCAATTTGCTTGGGGGAGTACCAAGAAAAGGAAATACTGAGAATTATGCCCAAGTGTGGTCACAATTTTCATGTTTCCTGCATTGATATCTGGTTGACAAGGCAATCTACATGTCCTGTATGCCGTCTTCCCTTGAAGCATCGTCCTGACAAAAAGAGTGCAATGTTTGTTTCCTTTGATGACAATGATGATGTTCAACATTCCATGGACCAGTCGTTGGTTCCTATTTCAGCAGGAAATGACACTAGCCAACAGCACAACCGTTCTACATCTACAGACCCAGGTTCCAATTTGGCTGGAGAATCAGTGCCTAGACACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87799.p1 GENE.S_Transcript_87799~~S_Transcript_87799.p1 ORF type:complete len:194 (+),score=35.16,zf-RING_2|PF13639.2|6.9e-14,zf-RING_11|PF17123.1|2.7e-10,zf-RING_11|PF17123.1|6.3e+03,zf-rbx1|PF12678.3|3e-09,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|9.4e-08,zf-C3HC4|PF00097.21|3.7e-07,zf-RING_5|PF14634.2|6.2e+03,zf-RING_5|PF14634.2|4.1e-06 S_Transcript_87799:569-1150(+)
MMGNMNLITTIIGFGMSSMFIMFICTRLICGRLWRSESRPMIYTGPPIDLEQPEQRMTNGLESTVVAAIPTMKFHRDAFSSLEDAQCSICLGEYQEKEILRIMPKCGHNFHVSCIDIWLTRQSTCPVCRLPLKHRPDKKSAMFVSFDDNDDVQHSMDQSLVPISAGNDTSQQHNRSTSTDPGSNLAGESVPRH*

Click here to download the sequence:
Link to NCBI Protein BLAST