Transcript Information: S_Transcript_87800.p1


Annotated TAIR IDAT4G10150.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:6328136-6329558 | Forward length=236
E-Value3E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0424812002806
Replicate 25.1200566483684
Replicate 36.1475786945335
Condition 2: 8 Hour
Replicate 110.257782684191
Replicate 29.8171825254497
Replicate 38.4543868137901
Condition 3: 24 Hour
Replicate 12.9495201337511
Replicate 22.7732090114518
Replicate 33.8311966184986


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87800.p1 GENE.S_Transcript_87800~~S_Transcript_87800.p1 ORF type:complete len:237 (+),score=37.63,zf-RING_2|PF13639.2|9.7e-14,zf-RING_11|PF17123.1|3.6e-10,zf-RING_11|PF17123.1|1.1e+04,zf-rbx1|PF12678.3|4.5e-09,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|1.3e-07,zf-C3HC4|PF00097.21|5.1e-07,zf-RING_5|PF14634.2|1e+04,zf-RING_5|PF14634.2|5.7e-06 S_Transcript_87800:412-1122(+)
ATGTTTTTGAGTTCTCTAGTTGTAAGGGCAATGGGAATGGTCAGTAAAATTACTATAGAGTTTGCTAGCTGGAAATGTAAGTGGAGATTTTACTGTCAACTTTTTTTGGGTCAGCAAAATTTGGGCATCATGATGGGTAATATGAATCTGATAACAACTATAATAGGATTTGGGATGAGTTCTATGTTTATTATGTTTATCTGCACAAGGCTAATCTGTGGGAGGCTATGGCGATCAGAGTCAAGGCCAATGCTTTATAGTGGACCACCAATTGATCTTGAACAGCCGGAGCAAAGGATGACTAATGGACTTGAATCAACTGTGGTTGCTGCAATCCCCACTATGAAGTTTCATCGCGATGCTTTCAGCTCCCTTGAAGATGCACAGTGTTCAATTTGCTTGGGGGAGTACCAAGAAAAGGAAATACTGAGAATTATGCCCAAGTGTGGTCACAATTTTCATGTTTCCTGCATTGATATCTGGTTGACAAGGCAATCTACATGTCCTGTATGCCGTCTTCCCTTGAAGCATCATCCTGACAAAAATGGTGCAAGGTTTGTTTCCTTTGATGACAATGATGATGTTCAACATTCTATGGATCAGTTGTTCGTTACAGTTTCAGTAGAAAATGACACTAGCCAACAACACAGCCGTTCTACATCTACAAACCCAGATCCCAATTTGGCTGAAGAATCAGTGCCTAGACACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87800.p1 GENE.S_Transcript_87800~~S_Transcript_87800.p1 ORF type:complete len:237 (+),score=37.63,zf-RING_2|PF13639.2|9.7e-14,zf-RING_11|PF17123.1|3.6e-10,zf-RING_11|PF17123.1|1.1e+04,zf-rbx1|PF12678.3|4.5e-09,zf-C3HC4_2|PF13923.2|1.6e+04,zf-C3HC4_2|PF13923.2|1.3e-07,zf-C3HC4|PF00097.21|5.1e-07,zf-RING_5|PF14634.2|1e+04,zf-RING_5|PF14634.2|5.7e-06 S_Transcript_87800:412-1122(+)
MFLSSLVVRAMGMVSKITIEFASWKCKWRFYCQLFLGQQNLGIMMGNMNLITTIIGFGMSSMFIMFICTRLICGRLWRSESRPMLYSGPPIDLEQPEQRMTNGLESTVVAAIPTMKFHRDAFSSLEDAQCSICLGEYQEKEILRIMPKCGHNFHVSCIDIWLTRQSTCPVCRLPLKHHPDKNGARFVSFDDNDDVQHSMDQLFVTVSVENDTSQQHSRSTSTNPDPNLAEESVPRH*

Click here to download the sequence:
Link to NCBI Protein BLAST