Transcript Information: S_Transcript_87817.p1


Annotated TAIR IDAT1G22020.1
Annotated Gene Nameserine hydroxymethyltransferase 6
Annotated Gene Symbol(s)SHM6
Annotation TypeOrtholog
Chromosome Positionchr1:7754599-7757087 | Forward length=599
E-Value5.5E-298
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 126.738930263107
Replicate 224.185550066992
Replicate 326.96595638722
Condition 2: 8 Hour
Replicate 120.047212348598
Replicate 217.784561063757
Replicate 319.164090118043
Condition 3: 24 Hour
Replicate 123.567666100262
Replicate 225.773829884143
Replicate 325.580086044936


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87817.p1 GENE.S_Transcript_87817~~S_Transcript_87817.p1 ORF type:complete len:634 (+),score=85.12,SHMT|PF00464.15|6.6e-164 S_Transcript_87817:446-2347(+)
ATGGATTTTACACACACACAATCGAATCTCTCTCTAGGTTTTCTCTCACACTCATCACACTCTTCTCCTCATTCAATGGGGAATTCAAACCCTAATACTATTACTACTACCAGTGCTACTACTCGAACCCTAGTTCACGATGATTCAATCTCATTCCAGATCGATTCTAGGCTACGCGAATCTTCAACTCCGATGAATTCAATACCTCTCCAATTACTCGAACAATCCGCTCAAAATCGCCGGATTCAAGCTGTTGTCGCTGAAGACAGAGAAATTGTGGAACACCAACAACAACCAGAAGACACTGAGGAGAGAGAAACCGGTGCCGATAACGATAAAAACAATAACGACGAAGATGAAGAGGTCGAGGAGTTTCGAATCTTAGGTCACTCTATGTGTCTAAAACGACGTCGTGGCGATAGAGAAGATTCAACTGCTTCATCATCTTCTATCGTGAAGCGCGTTTTCGTGGATTCTGGCCTTGAATCGCGTCGATGCGTGGTAAAGTCGTGGGGGAACCAGCCGTTGCGGGCGGCTGACCCGGAAATCTTCGAAATTATGGAAAAGGAGAAGCACAGACAATATAAAGGGATTGAATTGATTGCATCGGAGAATTTCGTGTGCAAGGCTGTAATGGAAGCTCTAGGAAGTCACTTGACGAATAAATACTCAGAGGGAATGCCTGGTTCGAGGTATTATGGGGGTAATCAGTACATGGATGAGATTGAGACGTTGTGTTGTGAGCGAGCTTTAGTGGCATTTGATCTTTGCTCGGACGATTGGGGTGTAAATGTACAACCCTACTCTTGTACCTCAGCAAATTTAGCGGTTTATACTGGACTTTTATTGCCAGGGGATCGGATTATGGGGTTAGATACCTTTTCTGGAGGGAACGCTAGTCATGGTTGTTATACGCCGAATGGTAGGAAGGTTTCTGGGGCATCGATTTTCTTTGAGAGCTTTCCTTATAAGATTAATCCTCAAACTGGTTATGTGGATTATGATAAGCTTGAGGAGAAGGCTCTTGATTTTCGTCCTAAAATATTGATTTGTGGTGGGAGTTCGTATCCTCGTGATTGGGATTATGCTAGGTTGAGGCAGATTGCTGGTAAGTGTGGAGCGGTTTTGATGTGCGATATGGCTCAAATTAGTGGCCTTATTGCTGCAAAGGAATATGCCAGCCCTTTTGATTATTGCGATATTGTTACCTCTACTACTCACAAGAGTCTGCGAGGACCTAGAGGAGGTATAATCTTTTATAGGAAGGGCAAGAAACCAAGAAAGAGAGGATTGCTCTTGAATCCTTCCGATGACGATGAGCAGTATGTTTTTGAGGAAAAGATCAACTTTGCTGTATTCCCTGCTTTACAAGGTGGTCCGCACAATAACCACATTGCTGCTCTTGCTATAGCCTTGAAACAAGTTGCTACCCCTGAGTATAAGGCATACATGCAACAAGTTAAGAGAAATGCACAGGCCCTGGCATCTGCCTTACTGAGAAGAAAGTGCAAGCTAGTAACTGGAGGAACTGACAATCACTTGCTACTTTGGGATCTACGGCCTCTTGGGTTGACAGGCAAGAATTTTGAGAAGGTCTGTGAAATATGCCATATCACTTTAAATAAAGTTGCTTTATTTGGCGACAACGGCACCATTACTCCAGGCGGTGTAAGGATTGGTACACCTGCAATGACAACAAGAGGCTGTCTGGAGGCTGATTTTGAGATAATTGCTGACTTTCTCATTCGTGCTGCTCAGATTACGAGTATGGTGCAGCGAGAACATGGAAAGCTACAGAAATGCTTCCTGAAGGGTTTACAGAACAACAAGGATGTTGTGGATTTGCGTGCTCGTATTGAAGCTTTTGCTGCTCAATTTGCCATGCCAGGATTTGACATATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87817.p1 GENE.S_Transcript_87817~~S_Transcript_87817.p1 ORF type:complete len:634 (+),score=85.12,SHMT|PF00464.15|6.6e-164 S_Transcript_87817:446-2347(+)
MDFTHTQSNLSLGFLSHSSHSSPHSMGNSNPNTITTTSATTRTLVHDDSISFQIDSRLRESSTPMNSIPLQLLEQSAQNRRIQAVVAEDREIVEHQQQPEDTEERETGADNDKNNNDEDEEVEEFRILGHSMCLKRRRGDREDSTASSSSIVKRVFVDSGLESRRCVVKSWGNQPLRAADPEIFEIMEKEKHRQYKGIELIASENFVCKAVMEALGSHLTNKYSEGMPGSRYYGGNQYMDEIETLCCERALVAFDLCSDDWGVNVQPYSCTSANLAVYTGLLLPGDRIMGLDTFSGGNASHGCYTPNGRKVSGASIFFESFPYKINPQTGYVDYDKLEEKALDFRPKILICGGSSYPRDWDYARLRQIAGKCGAVLMCDMAQISGLIAAKEYASPFDYCDIVTSTTHKSLRGPRGGIIFYRKGKKPRKRGLLLNPSDDDEQYVFEEKINFAVFPALQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALASALLRRKCKLVTGGTDNHLLLWDLRPLGLTGKNFEKVCEICHITLNKVALFGDNGTITPGGVRIGTPAMTTRGCLEADFEIIADFLIRAAQITSMVQREHGKLQKCFLKGLQNNKDVVDLRARIEAFAAQFAMPGFDI*

Click here to download the sequence:
Link to NCBI Protein BLAST