Transcript Information: S_Transcript_87920.p2


Annotated TAIR IDAT5G09860.1
Annotated Gene Namenuclear matrix protein-related
Annotated Gene Symbol(s)AtTHO1, THO1, AtHPR1, HPR1
Annotation TypeOrtholog
Chromosome Positionchr5:3066815-3070733 | Forward length=599
E-Value3.9E-166
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33059628863578
Replicate 21.3018416198534
Replicate 30.51548020109443
Condition 2: 8 Hour
Replicate 11.2583304845513
Replicate 21.4590336069387
Replicate 30.79437941385024
Condition 3: 24 Hour
Replicate 10
Replicate 22.7449958120421
Replicate 30.86162263495738


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87920.p2 GENE.S_Transcript_87920~~S_Transcript_87920.p2 ORF type:complete len:322 (+),score=49.93,efThoc1|PF11957.4|1.2e-51 S_Transcript_87920:192-1157(+)
ATGGAAATATTTAGGAGCGCGTTATTGAATCCAGGGCCACCTGAGAGTTTTGCCCTACAAACTGTGCAGGAAGCCATTAAACCTCAGAGGCAAACAAAATTAGTTCTGGATGAGAATCAGTTATTGGAGAACATATTACGGACATTACTTCAAGAATTGGTGGCATGTGCAGTACAGTCTGGGGAACCGATTATGCAATATGGTCGGTCCATCGCTGATGGCGATATTGCACAGGGTCAAATTCCTCGTCTTCTAGACATTGTATTGTACCTGTGTGAGAAAGAACATGTGGAGGGTGGCATGATATTTCAGCTGTTGGAGGATTTGACTGAAATGTCTACCATGAAAAATTGCAAAGACATTTTTGCGTATATAGAGAGCAAACAAGACATACTTGGAAAGCAAGAGCTGTTTGCACGAGGGAAACTTGTAATGTTGAGGACATGCAATCAGCTGCTTCGCCGTCTGTCAAAGGCTAATGATGTGGTGTTTTGTGGACGGATTCTTATGTTTCTGGCACATTTCTTCCCATTGTCTGAGCGCTCAGCTGTCAATATTAAGGGAGTTTTCAATACGTCCAATGAAACAAAGTTTGAGAAGGATGCACCTGATGGCATTTCTATCGATTTCAACTTCTACAAGACATTCTGGAGTTTACAGGAGTATTTTTATAACCCTCCTTCCTTGACTATGAATCTGACAAAGTGGCACAGATTTACATCCAGCTTAATGGTTGTACTAAACACCTTTGAGGCTCAACCCTTGAGTGATGAAGAAGGAAATGCTACTAATATTGAAGAAGAGGGGGCAGCTTTCAATATAAAATATCTTACCAGTAGTAAACTGATGGGTCTGGAGGAAAATTGCCTTCAAGTGATATTAGTTCTAGAAAGGAGTGGACCATGCAGATTTACATCACTTCCTTTCGAGTTTGTACTTCCTTTCGAGTTTGTTCAACTGTCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87920.p2 GENE.S_Transcript_87920~~S_Transcript_87920.p2 ORF type:complete len:322 (+),score=49.93,efThoc1|PF11957.4|1.2e-51 S_Transcript_87920:192-1157(+)
MEIFRSALLNPGPPESFALQTVQEAIKPQRQTKLVLDENQLLENILRTLLQELVACAVQSGEPIMQYGRSIADGDIAQGQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMKNCKDIFAYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKFEKDAPDGISIDFNFYKTFWSLQEYFYNPPSLTMNLTKWHRFTSSLMVVLNTFEAQPLSDEEGNATNIEEEGAAFNIKYLTSSKLMGLEENCLQVILVLERSGPCRFTSLPFEFVLPFEFVQLS*

Click here to download the sequence:
Link to NCBI Protein BLAST