Transcript Information: S_Transcript_87965.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8770812146141
Replicate 23.5032132067675
Replicate 33.0530205003258
Condition 2: 8 Hour
Replicate 12.8097642647574
Replicate 23.7034479167115
Replicate 32.8805199466191
Condition 3: 24 Hour
Replicate 15.5350211547114
Replicate 24.3643150670669
Replicate 35.0273669591279


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87965.p3 GENE.S_Transcript_87965~~S_Transcript_87965.p3 ORF type:3prime_partial len:296 (+),score=39.72,UBN2_3|PF14244.2|4.9e-13 S_Transcript_87965:4251-5135(+)
ATGTTAGTAGCTTGGATCAAAAATACTTTAGATAATGCAGTGCTTGCCAGTGTGGGTCGACTTGATGATTCTAAAGTCTTATGGGACAATTTAAAGTCTTGTTTTTCAATTAAGAACGGTGCCAAACAGTATCAGTTGTGGGCTGATCTTGTGGAGACTAAGCAACGTGGCATGTCTGTTATGTCTTATTATACCAAACTCTTGGCTATTTGGGAGGAAATAGCTGTACATGCACCAACGGACGAGCCAAAATTCAATTCTTGGTTTGAGGAACTCAAAACTTACCTGTTTCTCATGGGATTGGACTCTGCTAAATATGGGCATTCTCGGACTAACATTCTTGGCAAAGAACCTTTCCCCTCTTTATCTAATGCCTACTCTCAGGTTGTGCAAGAAGAACGCCATCAGTCCATAGCTTCTGTCGATGAACCAAGTCCGGCAGTTGGTTTTGCTGCTCAAGCTAGCACCCGTGGCAGGGGGACTGCAAGTTTTCAATCCAGTCTTCAGTCTGCACCAACATCTCAAGTTGCATCCAATTCCTTTTTTGAGCAACAAACTGGTAATACTCGAAACCAACCTTATTGCTCGTATTGTAATCGCTTTGGACATGTTTATGATACTTGTTATGAGCGCACTGGCAATTATCCACCTGGATGGACTCCTTGTGGTCGAGGAAGAGGACGTGACCGAGGTAACAATCAGGGTGTGCCACGTTCAGGACACCATCATCCCGCCTCAGTGGCAGCAATACAAAGTGGTGGAGTAACCACTGAACATACATTAGCAGCAACTCAATCTATGACTCCCATTATACATGGACTTTCAAATGAAGAAATTCAGAAATTGGTTACTATGTTGCGTTCTCCTGCCCCTTCTACCAGTTCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87965.p3 GENE.S_Transcript_87965~~S_Transcript_87965.p3 ORF type:3prime_partial len:296 (+),score=39.72,UBN2_3|PF14244.2|4.9e-13 S_Transcript_87965:4251-5135(+)
MLVAWIKNTLDNAVLASVGRLDDSKVLWDNLKSCFSIKNGAKQYQLWADLVETKQRGMSVMSYYTKLLAIWEEIAVHAPTDEPKFNSWFEELKTYLFLMGLDSAKYGHSRTNILGKEPFPSLSNAYSQVVQEERHQSIASVDEPSPAVGFAAQASTRGRGTASFQSSLQSAPTSQVASNSFFEQQTGNTRNQPYCSYCNRFGHVYDTCYERTGNYPPGWTPCGRGRGRDRGNNQGVPRSGHHHPASVAAIQSGGVTTEHTLAATQSMTPIIHGLSNEEIQKLVTMLRSPAPSTSS

Click here to download the sequence:
Link to NCBI Protein BLAST