Transcript Information: S_Transcript_87968.p4


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.033704906342
Replicate 214.964326830314
Replicate 318.923850937955
Condition 2: 8 Hour
Replicate 115.762245017011
Replicate 220.6210083114
Replicate 317.794098870245
Condition 3: 24 Hour
Replicate 122.794661033663
Replicate 218.328125883481
Replicate 317.984414271474


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_87968.p4 GENE.S_Transcript_87968~~S_Transcript_87968.p4 ORF type:3prime_partial len:115 (+),score=19.07,UBN2_3|PF14244.2|3e-24 S_Transcript_87968:4002-4343(+)
ATGACCGACGACGACAAGAAGTCCAAGTTCCTCGTCTCCGATCCCACTTCACCCTACTATGTGCATCCATCTGATGGTCCAGGTTTGATTCTTACCAAGGTTGTTTTGAATGGTGAAAATTATGATATTTGGGAATCAGCAATTGTTAATGGGTTGAGAGCTAAAAATAAACTCAGCTTTGTCAATGAAAAAATTACTAAACCAGAATTGAAATCAAAAGAATATTTATCCTGGGAAATTGTCAATTCCATGTTAGTAGCTTGGATCAAAAATACTTTAGATAATGCAGTGCTTGCCAGTGTGGGTCGACTTGATGATTCTAAAGTCTTATGGGACAATTTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_87968.p4 GENE.S_Transcript_87968~~S_Transcript_87968.p4 ORF type:3prime_partial len:115 (+),score=19.07,UBN2_3|PF14244.2|3e-24 S_Transcript_87968:4002-4343(+)
MTDDDKKSKFLVSDPTSPYYVHPSDGPGLILTKVVLNGENYDIWESAIVNGLRAKNKLSFVNEKITKPELKSKEYLSWEIVNSMLVAWIKNTLDNAVLASVGRLDDSKVLWDNL

Click here to download the sequence:
Link to NCBI Protein BLAST