Transcript Information: S_Transcript_88826.p1


Annotated TAIR IDAT4G15093.1
Annotated Gene Namecatalytic LigB subunit of aromatic ring-opening dioxygenase family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:8618454-8619472 | Forward length=269
E-Value2.5E-121
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.8726563139441
Replicate 29.1514464724097
Replicate 36.0487430242034
Condition 2: 8 Hour
Replicate 111.039832286362
Replicate 212.013179173101
Replicate 313.845019987801
Condition 3: 24 Hour
Replicate 16.0407073318042
Replicate 29.0363750336562
Replicate 38.1099821238315


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_88826.p1 GENE.S_Transcript_88826~~S_Transcript_88826.p1 ORF type:complete len:311 (+),score=50.41,LigB|PF02900.14|7.2e-58 S_Transcript_88826:116-1048(+)
ATGCGTATAATTACCTTCAAAAAACAACTACAATTCCTTATAGCTTTACCTTTATTCTATTTTTCTTGCAATAATTTTCTCAAATCAAACCCCATTCCCAGCTCCAAGAAAGCAGAGATAAGCATGAGTTCAGGAGCAGTAAAAGAGACTTTCTACATATCACACGGATCACCAATGCTTTCAGTGGATGAATCATTACCAGCGAGGCGTTTCTTGAAGGGTTGGAGAGATGAAAACTTCACCACCCAAAAACCCAAATCAATTCTTGTCATTTCTGGTCACTGGGAAACTGATGAACCTACCCTTACAGCTGTTGACCGTTGTGATACCATCTATGATTTTTATGGCTTTCCTTCCCCTTTGTACAAGCTCAAGTATCCTGCTCCTGGTGCTCCAGAGTTAGCAAAGCGAGCACAAGAACTTCTCTCGAGCTCTGGGTTCAAGCATGTGCGTTTGGACAAAAAACGCGGGCTTGATCATGGTGCTTGGGTGCCTCTCATGCTCATGTATCCCGACGTTGACATCCCTATTTGTCAGCTCTCCATCCAAATGCACAAGGATGCAAGGTACCATTATATGATGGGACAAGCATTGGCCCCTCTCAAGGATGAAGGTGTCCTCATCATCGGTTCTGGAAGTGCCACGCACAATTTGAGAACACTTAACTTCAATGCTGATGACGTTTCCTCTTGGGCTTCGGAGTTTGATAAGTGGCTAGAAGAAGCCCTGACGAGTGGAAGGTATGAGGACGTGAATGACTTTGAAAAGAAAGCACCTCATGCAAAGAAGAGTCACCCAACGCCAGATCACTTCTACCCATTGCACGTAGCAATGGGTGCCGCTGGTGAAGACTCAAAGGCGGAGCTAATTCACCGTAGTTGGAGCCTTGGCACTCTATCCTATGCCTCCTACAAGTTTGCCATCCCCAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_88826.p1 GENE.S_Transcript_88826~~S_Transcript_88826.p1 ORF type:complete len:311 (+),score=50.41,LigB|PF02900.14|7.2e-58 S_Transcript_88826:116-1048(+)
MRIITFKKQLQFLIALPLFYFSCNNFLKSNPIPSSKKAEISMSSGAVKETFYISHGSPMLSVDESLPARRFLKGWRDENFTTQKPKSILVISGHWETDEPTLTAVDRCDTIYDFYGFPSPLYKLKYPAPGAPELAKRAQELLSSSGFKHVRLDKKRGLDHGAWVPLMLMYPDVDIPICQLSIQMHKDARYHYMMGQALAPLKDEGVLIIGSGSATHNLRTLNFNADDVSSWASEFDKWLEEALTSGRYEDVNDFEKKAPHAKKSHPTPDHFYPLHVAMGAAGEDSKAELIHRSWSLGTLSYASYKFAIPN*

Click here to download the sequence:
Link to NCBI Protein BLAST