Transcript Information: S_Transcript_89030.p1


Annotated TAIR IDAT4G28200.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:13987808-13990422 | Reverse length=648
E-Value2E-242
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.925340383621
Replicate 28.3453430638685
Replicate 310.817102480887
Condition 2: 8 Hour
Replicate 18.5236246137392
Replicate 29.7641299576142
Replicate 39.5970278650299
Condition 3: 24 Hour
Replicate 17.2593257541484
Replicate 26.559663687488
Replicate 37.6091006857701


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89030.p1 GENE.S_Transcript_89030~~S_Transcript_89030.p1 ORF type:complete len:653 (+),score=137.26,U3_assoc_6|PF08640.7|1.3e-27,U3_assoc_6|PF08640.7|5.8e+03,U3_assoc_6|PF08640.7|1.1e+02,TPR_14|PF13428.2|77,TPR_14|PF13428.2|2.4e+02,TPR_14|PF13428.2|49,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|21,TPR_14|PF13428.2|1.1,TPR_14|PF13428.2|1.3e+04,TPR_14|PF13428.2|1.6e+04 S_Transcript_89030:95-2053(+)
ATGGCGGACATAGTACGATACAGGCTAGAGAGAATGGTACCGGAGCTCGAAGACCTAGAACGAAGATCCCTATTCACCAAGAGAGAGATAAACGAGATTGTAAAAACTAGAACAAAATTCGAGTACCGATTGCAAAGACCAAGCCCATTAAAGCAAGATTTTTTGGATTACATTGAATATGAGAAGCAACTTGATAGACTTAGGGTTTTGAGAAAGAAAGCGGTTTCACGTGAGCTTAAGGAAAAGGGGAATAAGAAGCTGAAGAAATCAGTATCGGATTTTGCTGGGGTTAGAAGGATTATTGAGATTTATAGAATGGCTACTAGTAGATTTAAGGGTGACCTTAAGCTTTGGTTTCAGTATTTGGAGTTTTGTAAGGAGAAGAAGAATGGCACGATGAAAAGGGCCTTGGCTCAGGCGATCAGGTTCCATCCAAAAAAGCCTGCAGTATGGGTGTATGCAGCTGCTTGGCAGTTTGACCATAACTTAGATGCTCAAGCTGCACGTGCTACCATGCTAAATGGTTTGAGAGCATGCCCACATTCAGAAGATCTATGGGTGGAGTATCTGCGCATGGAACTTACATACCTTAATAAATTAAAAATGCGTAAGGTCATGTTAGAGGAAGATGATGGTACTCTGATTCTTGATCATGAAGATGCTGAGGAGAAGCAGTGGCAAGATGAGAATAAAGAATTATTCATGTCCCTTGAAGAACATAAACAGGGTGGAAAGGGAGTGGAAGTTTCTAATGAAGATTCAAACAGGAAATTGGATATCTTTCGGGATCATGGCATTAGCATTCTGCGTACTGTGTACAAAAATGCAGTTGATGCTCTGCCATCTAATTTCAATCTTAGAAAGAGATTTCTTGAGATCGTTGAAGCTACTGATTTGGCACATTCAGAAGAAATCCAAAATGAGATTTTAGCTGACATGAAGAGAGATTTCTCCCAAGAACCTGAATATTGGGATTGGCTTGCTCGACTTAAAATGAATGATCCACAAAGTACTCCAGATATAGGTTCGGAAAGTGGAGGTCGTCAGGTGGATGAAGTTATTAAGGTATATGAGGAGGCTATACAACTTGCGCCATCCCTTGTGATGTTTGACATGTACATCAAATTCTTAATGTCTTGCATTATTCCACAAGGAGAAGAAATGCAAGATTTTGGGCTTTCCAGTGCCTCAAATTCTGAAGCAAAATATGCTTCACAGCTATTGAAGATTTTTGAGAAAGCTGAAACCATGGGGTGTCTTAGTGAAGATCTTGCTTGCCAGCACATTAAATTTTACTTGCATACGGGGAAATTTGATGAAGCAATGAAGTTAGCGGAGAGATTTTGTGATGGTAGGTTTTCAGATTCAGTACTATTATGGGTACTGCGGGCCACAGAACATATGAAGATGATTAAAAAGTGTGCAAGTTCTCGTAAGGATCTATCATCTGTTATTGACCTCTTGAAAAAGATGGTGAAGAAAGCTGCTGTGTCTGGTGCTGAGAGTGTGTGGGTAATGGCCCTTGAGCTCTTTGCAGATGACAAAAAGTACTTCAAGAAGTTGCTGGATCTTTCCCTTGTTTCACTAGCAAAAGATGGTGGCACAGATAATGGGTTCTCTCTTCCAGCAACTCTTGTTAATTTTGTCCGTGAGAAGAATGGGATTCAGCAAGCAAGAGAATTGTACAAGCGTCTTATTAATTTACCTCACCCTGGGCTGGCCTTCTACAAACACTGCATTGAGTTAGAGATTTCAACCAATGACAAAAATAGTCTTGCGAACACACGGAAGTTATTTGAGTGCGCACTTACAACATATAGTGAAGACATCAGCTTGTGGCAGAAATATTATTCTATGGAGACAGAGATGGGAACTTCAGAAACAACAAACGCTGTATATTGGCGTGCAAAGAAAACACTTGGAGATGCCTCAGTGATTACTGCTCAATCCCTACAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89030.p1 GENE.S_Transcript_89030~~S_Transcript_89030.p1 ORF type:complete len:653 (+),score=137.26,U3_assoc_6|PF08640.7|1.3e-27,U3_assoc_6|PF08640.7|5.8e+03,U3_assoc_6|PF08640.7|1.1e+02,TPR_14|PF13428.2|77,TPR_14|PF13428.2|2.4e+02,TPR_14|PF13428.2|49,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|21,TPR_14|PF13428.2|1.1,TPR_14|PF13428.2|1.3e+04,TPR_14|PF13428.2|1.6e+04 S_Transcript_89030:95-2053(+)
MADIVRYRLERMVPELEDLERRSLFTKREINEIVKTRTKFEYRLQRPSPLKQDFLDYIEYEKQLDRLRVLRKKAVSRELKEKGNKKLKKSVSDFAGVRRIIEIYRMATSRFKGDLKLWFQYLEFCKEKKNGTMKRALAQAIRFHPKKPAVWVYAAAWQFDHNLDAQAARATMLNGLRACPHSEDLWVEYLRMELTYLNKLKMRKVMLEEDDGTLILDHEDAEEKQWQDENKELFMSLEEHKQGGKGVEVSNEDSNRKLDIFRDHGISILRTVYKNAVDALPSNFNLRKRFLEIVEATDLAHSEEIQNEILADMKRDFSQEPEYWDWLARLKMNDPQSTPDIGSESGGRQVDEVIKVYEEAIQLAPSLVMFDMYIKFLMSCIIPQGEEMQDFGLSSASNSEAKYASQLLKIFEKAETMGCLSEDLACQHIKFYLHTGKFDEAMKLAERFCDGRFSDSVLLWVLRATEHMKMIKKCASSRKDLSSVIDLLKKMVKKAAVSGAESVWVMALELFADDKKYFKKLLDLSLVSLAKDGGTDNGFSLPATLVNFVREKNGIQQARELYKRLINLPHPGLAFYKHCIELEISTNDKNSLANTRKLFECALTTYSEDISLWQKYYSMETEMGTSETTNAVYWRAKKTLGDASVITAQSLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST