Transcript Information: S_Transcript_89197.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value1E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4785000686211
Replicate 21.414281381892
Replicate 31.3398568949624
Condition 2: 8 Hour
Replicate 10.36453658661766
Replicate 21.1472742892168
Replicate 30.36437346333302
Condition 3: 24 Hour
Replicate 10.18670840590251
Replicate 20.29056168687625
Replicate 30.10778651455178


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89197.p1 GENE.S_Transcript_89197~~S_Transcript_89197.p1 ORF type:3prime_partial len:234 (+),score=17.14,LRR_8|PF13855.2|0.072,LRR_8|PF13855.2|3.1e-06,LRR_8|PF13855.2|1.3e-08,LRR_4|PF12799.3|2.4,LRR_4|PF12799.3|1.7e-05,LRR_4|PF12799.3|0.00096,LRRNT_2|PF08263.8|9.5e-08,LRR_1|PF00560.29|0.69,LRR_1|PF00560.29|0.064,LRR_1|PF00560.29|2.2e+03 S_Transcript_89197:59-700(+)
ATGAGGAGCCCACGAAACCTCTTAATTTCTCTGATAATTTGCTGTACTCTAATGGCGATTGCCCAGTCCACGGATTTCCCGGTTTGCCATGCAGATGACCGAGCCGTGCTCCTCCAAATCAAAGCCAAAATCGCAAACCCTAATGCCAGCCTTGGTTCCCTTGACGATTGGCAACCCGACACAGACTGCTGTTGGTGGAACTTCGTGGGCTGCCTTCCGGACGGAACCGTCAACACCGGCCGTGTCAACGCCGTCACCATCTCCTCTGGGAGTGGCCTTGTGGGCCAAATCCCCGACGAGATCGGAGACCTGCCTTTCCTAGAGGAGATTATGTTCATTGATGAGCCTAGGCTTACAGGAACACTGCCACAGTCCATGAGCAAGCTCAAGAGGCTTCAAATCATCTATCTTTCTTCCAACAATCTTTCTGGACCGATCCCGGAATTTCTTGGCCGGCTTAAGAACCTCCAGGAAGTTGATCTCTCTGGCAACAAGTTTTCCGGAGTCATTCCACCTTCTCTTTCTCGCCTATCAAAACTCTCCTCCTTTAATGTTTCACGGAATGTGTTAGCGGGTTCGATCCCGAAAATGCAAACCAAGAAACTCACGACCTTCTCTTTCTCGCCTATCAAAACTCTCCTC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89197.p1 GENE.S_Transcript_89197~~S_Transcript_89197.p1 ORF type:3prime_partial len:234 (+),score=17.14,LRR_8|PF13855.2|0.072,LRR_8|PF13855.2|3.1e-06,LRR_8|PF13855.2|1.3e-08,LRR_4|PF12799.3|2.4,LRR_4|PF12799.3|1.7e-05,LRR_4|PF12799.3|0.00096,LRRNT_2|PF08263.8|9.5e-08,LRR_1|PF00560.29|0.69,LRR_1|PF00560.29|0.064,LRR_1|PF00560.29|2.2e+03 S_Transcript_89197:59-700(+)
MRSPRNLLISLIICCTLMAIAQSTDFPVCHADDRAVLLQIKAKIANPNASLGSLDDWQPDTDCCWWNFVGCLPDGTVNTGRVNAVTISSGSGLVGQIPDEIGDLPFLEEIMFIDEPRLTGTLPQSMSKLKRLQIIYLSSNNLSGPIPEFLGRLKNLQEVDLSGNKFSGVIPPSLSRLSKLSSFNVSRNVLAGSIPKMQTKKLTTFSFSPIKTLL

Click here to download the sequence:
Link to NCBI Protein BLAST