Transcript Information: S_Transcript_89198.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value2E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.9107110688845
Replicate 20.50333360207258
Replicate 31.192116020613
Condition 2: 8 Hour
Replicate 10.72976620857109
Replicate 20.25519218980677
Replicate 31.458879303763
Condition 3: 24 Hour
Replicate 10.24918118050107
Replicate 20
Replicate 30.19180261905031


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89198.p1 GENE.S_Transcript_89198~~S_Transcript_89198.p1 ORF type:complete len:263 (+),score=21.39,LRR_8|PF13855.2|0.071,LRR_8|PF13855.2|1.7e-08,LRR_8|PF13855.2|6.9e+02,LRR_1|PF00560.29|0.82,LRR_1|PF00560.29|0.076,LRR_1|PF00560.29|2.9e+03,LRR_1|PF00560.29|3.5,LRR_4|PF12799.3|2.9,LRR_4|PF12799.3|2.1e-05,LRR_4|PF12799.3|0.0012,LRR_4|PF12799.3|2.5e+02,LRRNT_2|PF08263.8|1.1e-07 S_Transcript_89198:110-790(+)
ATGGCGATTGCCCAGTCCACGGATTTCCCGGTTTGCCATGCAGATGACCGAGCCGTGCTCCTCCAAATCAAAGCCAAAATCGCAAACCCTAATGCCAGCCTTGGTTCCCTTGACGATTGGCAACCCGACACAGACTGCTGTTGGTGGAACTTCGTGGGCTGCCTTCCGGACGGAACCGTCAACACCGGCCGTGTCAACGCCGTCACCATCTCCGCTGGAAGTGGCCTTGTGGGCAAAATCCCGGACGAGATCGGGAACCTGCCTTTCCTAGAGGAGATTATGTTCATTGATGAGCCTAGGCTTACAGGAACACTGCCACAGTCCATGAGCAAGCTCAAGAGGCTTCAAATCATCTATCTTTCTTCCAACAATCTTTCTGGACCGATCCCGGAATTTCTTGGCCGGCTTAAGAACCTCCAGGAAGTTGATCTCTCTGGCAACAAGTTTTCCGGAGTCATTCCACCTTCTCTTTCTCGCCTATCAAAACTCTCCTCCTTTAATGTTTCACGGAATGTGTTAGCGGGTTCGATCCCGAAAATGCAAACCAAGAAACTCACGACCTTCGATGTTAGCTTCAATCAGCTTTGCGGGGCGATTCCTGCTGAATTAAGCAAGTTTAATTCAACTAGTTTTGCGCACAACAAGTGTCTTTGTGGTTCTCCTTTGGCTGCTTGCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89198.p1 GENE.S_Transcript_89198~~S_Transcript_89198.p1 ORF type:complete len:263 (+),score=21.39,LRR_8|PF13855.2|0.071,LRR_8|PF13855.2|1.7e-08,LRR_8|PF13855.2|6.9e+02,LRR_1|PF00560.29|0.82,LRR_1|PF00560.29|0.076,LRR_1|PF00560.29|2.9e+03,LRR_1|PF00560.29|3.5,LRR_4|PF12799.3|2.9,LRR_4|PF12799.3|2.1e-05,LRR_4|PF12799.3|0.0012,LRR_4|PF12799.3|2.5e+02,LRRNT_2|PF08263.8|1.1e-07 S_Transcript_89198:110-790(+)
MAIAQSTDFPVCHADDRAVLLQIKAKIANPNASLGSLDDWQPDTDCCWWNFVGCLPDGTVNTGRVNAVTISAGSGLVGKIPDEIGNLPFLEEIMFIDEPRLTGTLPQSMSKLKRLQIIYLSSNNLSGPIPEFLGRLKNLQEVDLSGNKFSGVIPPSLSRLSKLSSFNVSRNVLAGSIPKMQTKKLTTFDVSFNQLCGAIPAELSKFNSTSFAHNKCLCGSPLAACK*

Click here to download the sequence:
Link to NCBI Protein BLAST