Transcript Information: S_Transcript_89201.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value3E-34
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.611229639367
Replicate 216.336569367015
Replicate 315.979011797623
Condition 2: 8 Hour
Replicate 117.255659340581
Replicate 219.468631640678
Replicate 321.641280392844
Condition 3: 24 Hour
Replicate 16.5868160143395
Replicate 26.1417199309949
Replicate 33.8506938023078


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89201.p1 GENE.S_Transcript_89201~~S_Transcript_89201.p1 ORF type:5prime_partial len:262 (+),score=31.07,LRR_8|PF13855.2|2.6e+03,LRR_8|PF13855.2|4.5e-09,LRR_8|PF13855.2|8.8e+02,LRR_1|PF00560.29|9.6,LRR_1|PF00560.29|1.2,LRR_1|PF00560.29|2.5e+02,LRR_1|PF00560.29|3,LRR_4|PF12799.3|7.3e+03,LRR_4|PF12799.3|6.8e-05,LRR_4|PF12799.3|0.0066,LRR_4|PF12799.3|5.3,LRRNT_2|PF08263.8|4.1e-07 S_Transcript_89201:1-786(+)
CCGGGGAAACAATTTATATTCATATCCAAAGTTCATTCATTATTTTTTCAAAGGAACAAAATGAGGTGCTTCAAAAATCTCTTTACTTGTGTCCTCCTTTTTTCTCTGATTGCCATCTCTCGGGCCACCGATGATCCGTCCTGTGACCCGAATGACCAAGCAGTTCTTCTACAAATCAAAGCCAAAATTAAAAGCCCGGGCTCTGGGATAGGTTCACTGGACGACTGGCAGCCGAACACAAACTGCTGTGACTGGGACTTCATCGGCTGCATTGCCGTCGGAAACAAGAACCCAGGCCGTGTGAAAGCGCTCACCATCTCCGGCGGGAGCGGCCTTGTGGGCCAAATCCCCGACGAGATCGGAAACCTACCATTCCTAGAGAACATCATGTTCTTCGATGAGCCGAAACTCACAGGCCCAATCCCACAGTCCATGAGCAAGCTCAAGAACCTTCAAGTCATAACTCTGAATTCCAACAGTCTTTCTGGAGCTATCCCTGCATTTCTTGGCCAGCTCAAGAACCTCCAACAAGTTGACATTTCTGACAACAAGTTTTCTGGTGTAATTCCAGCGTCTCTTTCTAAGCTCACCAAACTCTCGGCCTTCAATGTGTCCCATAATATGTTAACGGGAGCCATCCCTAACTTGCAGACCAAGAAACTTACGAGCTTTGATGTGAGTTTCAACCAGCTTTGTGGGGCCATTCCTGCTGGTTTGAGCAAGTTTGGGTCTACTAGCTTTCAGAATAACAAGTGTCTTTGTGGTTCTCCCTTGGCCGCTTGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89201.p1 GENE.S_Transcript_89201~~S_Transcript_89201.p1 ORF type:5prime_partial len:262 (+),score=31.07,LRR_8|PF13855.2|2.6e+03,LRR_8|PF13855.2|4.5e-09,LRR_8|PF13855.2|8.8e+02,LRR_1|PF00560.29|9.6,LRR_1|PF00560.29|1.2,LRR_1|PF00560.29|2.5e+02,LRR_1|PF00560.29|3,LRR_4|PF12799.3|7.3e+03,LRR_4|PF12799.3|6.8e-05,LRR_4|PF12799.3|0.0066,LRR_4|PF12799.3|5.3,LRRNT_2|PF08263.8|4.1e-07 S_Transcript_89201:1-786(+)
PGKQFIFISKVHSLFFQRNKMRCFKNLFTCVLLFSLIAISRATDDPSCDPNDQAVLLQIKAKIKSPGSGIGSLDDWQPNTNCCDWDFIGCIAVGNKNPGRVKALTISGGSGLVGQIPDEIGNLPFLENIMFFDEPKLTGPIPQSMSKLKNLQVITLNSNSLSGAIPAFLGQLKNLQQVDISDNKFSGVIPASLSKLTKLSAFNVSHNMLTGAIPNLQTKKLTSFDVSFNQLCGAIPAGLSKFGSTSFQNNKCLCGSPLAAC*

Click here to download the sequence:
Link to NCBI Protein BLAST