Transcript Information: S_Transcript_89300.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value1E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.41775820504
Replicate 24.1698672263703
Replicate 34.2971575074789
Condition 2: 8 Hour
Replicate 13.9025464280353
Replicate 23.1320588095617
Replicate 34.2631695209963
Condition 3: 24 Hour
Replicate 15.8762736589698
Replicate 24.895383300491
Replicate 34.993964792213


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89300.p1 GENE.S_Transcript_89300~~S_Transcript_89300.p1 ORF type:complete len:1000 (+),score=156.22,PIF1|PF05970.10|2e-105,Helitron_like_N|PF14214.2|9.5e-34,Helitron_like_N|PF14214.2|7.1e+03,AAA_30|PF13604.2|1.2e-07 S_Transcript_89300:3-3002(+)
ATGGCCCTCGTCCAAAAGTATGGCAAGCCAGATATCTTCTTGACGATGACATGCAATCCAAAATGGAAGGAAATTCAAGACGAATTGAGCCCAGGTGAAAAAGTGGAGAATCAACCAGACTTAGTAGCTAGAATATTTCGGGCAAAATTAATGGTCCTCAAGAAGAAAATAATGGAAGAAGAATTTTTTGGCCCTGTTGCAGCCATGATTTATGTTGTTGAGTTCCAGAAACGCGGACTTCCACATGTCCACTTTTTAATCATTTTGAAGGCTGGTTTTAAGATCAAATCACCTGAGCAATTTGATAAGTTTGTTTGTGCTGAGATACCACCCATTGAGAAGCCATATTTGAGATCATTGGTTCTGAAGCATATGATGCATGGTCCCTGTGGCCCAATGTTTCCTGAGTGTCCATGCATGCAAAAAAAAGGAACTACGCTGATGTGCCGAAGTAATTATCCTAAGAGGCATGTTGAGTTCACAACGAATAATTCCGATGGATACCCTTTGTATCGAAGAAGATGCAATGGTGATGCTGTGACGGTGAGAAAATTTCCTATGGACAACCAATGGGTGATTCCTTATAATCCAGAACTGTTAGAGTTATTTGATTGTCACATCAATGTCGAGGTCTGTTCGACAATTACAGCAGTGAAGTACTTGTACAAGTACGTTTATAAAGGCCATGATAAAGTCTCATTTTCATTAGCTTCATCAGACAAACCAGTGGATGAAATTCAAGCATTCCAAGCAGGAAGATGGGTTTCACCACCTGAAGCAGCATGGCGTATTTTTGGATTTGATTTATATGAAATGTGGCCTTCTGTGCTGCCTTTACAAGTCCATTTGCCAAACAAGCAGAGTGTGTCTTTCAACCTTCATGAGCACGTGCCATCCATTGTTCGTAACAGCCAGAAATACGAAACACAGCTAACAGCTTTTTTTAGAATGAATGCTGCTCAAGCTGAGCGACCGAAGATGCGTTATTCAGAGTGTCCAGAACATTTTGTGTGGAACAAGAAGCAAAAGATATGGACACCAAGAATAGGAAAGCTACAAGTGGGAAGACTTGTATTTGTGAGTCCTGGTGAGGGGGAGCGCTACTTTTTGCGGTTGTTGCTCTGTCATGTTGAGGGGCCAACTTCTTTTGAAGATTTGTTAACCGTCGAGGATACAAAATGCCAGAGTTTCAAAGAAGCAGCTATGAAGAGGGGCCTTGTTGAAGCTGATGATGCCATTGACCAGTGTCTTAAAGAAGCAACTGAATTCCAAATGCCAGGTGCTCTTAGGCAGCTTTTTGCTACAACTTTATTGTTCTCCCAGCCTGCGGAACCACGCACACTGTGGAACAAATATTACTCTGATCTTTCAGAAGATTACAGACACTCGTACCCTCTAGACGAAAAAAAAGCAAGGCATCTAACTTGCCAAGACATTGAACGACTTTTGAAGCCTGCTGGCAAAACTTTTTTGGACTTTGATCTACCGGACCTCCACAAAATAGCAGAAGAATCAAACCTGCAGCGTTGCTCCATGGAAGTAATTGATGCTATCAATGCTCCTGTTCCAAAACACTTTGTAGGCCTTTGGAAGCAACTCAATGATAAGCAAAAAGAGGCTTATAAAGCAATCATGGCATGTGTGAAGGAAAAGAAGCCGGGAGTATTCTTTATCGATGGCCCTGGTGGCACTGGGAAAACTTTCCTTTACTGTGCCATTTATGCAAAAGTGCGACTCATGGATAAGATTGTTTTGCCAACAGCGAGTTCAGGAATTGCTGCTTCAAATATTCCGAGTGGCCGAACTGCACACTCGCGGTTTAAAATTCCTTTAGATTCAGATGATTCGATGGTTTGCAATGTGCCCAAACAAAGTGACTTGGCACAGCTGCTAAGGGAGGCTGCATTAATAATTTGGGACGAAGCATCAATGGCAAGAAAGGAAAATGTTGAAGCTGTTGATCGGTTGTTGCGTGATATTTGCAGCTCTCCATTGCCATTTGGTGGCAAGGTGGTTGTGTTTGGTGGAGATTTCAGGCAGGTGCTCGCTGTGATACCAAAGCGAACACAACATGAACTTGTTGATCACAGCCTTGTGAGTTCATATCTATGGCCGACGTTTAGGAGATTTACACTTGCTGAGAACATGCGTGCAAAAGAAGATCCACATTTCACAGCTTTCTTACTAAGTCTAGGCAATGGTGATTTCCAAAAAGTCGAGCAAGCAGCTATTGAACTCCCACGATCCCTGGTGTCAAGGCTACGAGCAGATAACAATGCTTTACAGCATCTTGTGAATCTGGTGTACCCTGATCTTCCTCAGCTTGCAGCCCATCCGCATGCATTCAGCTCACGTGCAACACTAACTCCAACAAATGATGAGGTTGATTGCATTAATAAATTAGTGATTGACAATTTCCCGGGTGAACCATGCACTTACAAAAGCTATGACCGCACTCTAGACGATGATTGTAATGCTCATCCAGTAGAGTTCTTGAATACACTATGTCCAGGGGGTATGAGTCCACACAACTTGACATTAAAGTTGAACTGCCCGGTCATATTACTACGCATTCTCAATCCATCAGTTGGACTTTGCAATGGAACCAGGCTCATAGTCAGAGGTTTTAAGCCTAATCTGGTTTTGTGTGAGATAGCAACAGGATATCGTTCTGGTGAGTACATCTTCATTCCACGAATTAGTCTAGCACCATCAAGCTCCATCACCTATCCATATAGATTTGAAAGACGGCAGTTTCCAATCAAACTTTGCTTCGCGATGACAATCAACAAGTCTCAGGGGCAAACACTCAGTAATGTTGCTGTGTACCTTCGAAAGCCGTGTTTTTCACATGGCCAGCTCTATGTTGCGCTGTCTAGAGCAAAGAAAGCAAGTTGTGTCAAAGTCTTTATTGATGAAGAAAAACAAACTGATCCAGACAGAGATATTGTTACCAATGTCATTTCCTTCGATTTGCTTCAAAAGGCCGGAATCCTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89300.p1 GENE.S_Transcript_89300~~S_Transcript_89300.p1 ORF type:complete len:1000 (+),score=156.22,PIF1|PF05970.10|2e-105,Helitron_like_N|PF14214.2|9.5e-34,Helitron_like_N|PF14214.2|7.1e+03,AAA_30|PF13604.2|1.2e-07 S_Transcript_89300:3-3002(+)
MALVQKYGKPDIFLTMTCNPKWKEIQDELSPGEKVENQPDLVARIFRAKLMVLKKKIMEEEFFGPVAAMIYVVEFQKRGLPHVHFLIILKAGFKIKSPEQFDKFVCAEIPPIEKPYLRSLVLKHMMHGPCGPMFPECPCMQKKGTTLMCRSNYPKRHVEFTTNNSDGYPLYRRRCNGDAVTVRKFPMDNQWVIPYNPELLELFDCHINVEVCSTITAVKYLYKYVYKGHDKVSFSLASSDKPVDEIQAFQAGRWVSPPEAAWRIFGFDLYEMWPSVLPLQVHLPNKQSVSFNLHEHVPSIVRNSQKYETQLTAFFRMNAAQAERPKMRYSECPEHFVWNKKQKIWTPRIGKLQVGRLVFVSPGEGERYFLRLLLCHVEGPTSFEDLLTVEDTKCQSFKEAAMKRGLVEADDAIDQCLKEATEFQMPGALRQLFATTLLFSQPAEPRTLWNKYYSDLSEDYRHSYPLDEKKARHLTCQDIERLLKPAGKTFLDFDLPDLHKIAEESNLQRCSMEVIDAINAPVPKHFVGLWKQLNDKQKEAYKAIMACVKEKKPGVFFIDGPGGTGKTFLYCAIYAKVRLMDKIVLPTASSGIAASNIPSGRTAHSRFKIPLDSDDSMVCNVPKQSDLAQLLREAALIIWDEASMARKENVEAVDRLLRDICSSPLPFGGKVVVFGGDFRQVLAVIPKRTQHELVDHSLVSSYLWPTFRRFTLAENMRAKEDPHFTAFLLSLGNGDFQKVEQAAIELPRSLVSRLRADNNALQHLVNLVYPDLPQLAAHPHAFSSRATLTPTNDEVDCINKLVIDNFPGEPCTYKSYDRTLDDDCNAHPVEFLNTLCPGGMSPHNLTLKLNCPVILLRILNPSVGLCNGTRLIVRGFKPNLVLCEIATGYRSGEYIFIPRISLAPSSSITYPYRFERRQFPIKLCFAMTINKSQGQTLSNVAVYLRKPCFSHGQLYVALSRAKKASCVKVFIDEEKQTDPDRDIVTNVISFDLLQKAGIL*

Click here to download the sequence:
Link to NCBI Protein BLAST