Transcript Information: S_Transcript_89341.p2


Annotated TAIR IDAT5G60600.1
Annotated Gene Name4-hydroxy-3-methylbut-2-enyl diphosphate synthase
Annotated Gene Symbol(s)GCPE, ISPG, CSB3, CLB4, HDS
Annotation TypeOrtholog
Chromosome Positionchr5:24359447-24363274 | Forward length=741
E-Value5.3E-120
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.632222559081
Replicate 247.880947550351
Replicate 350.540944841867
Condition 2: 8 Hour
Replicate 139.565405013915
Replicate 238.555739145061
Replicate 344.17369269628
Condition 3: 24 Hour
Replicate 162.002286332878
Replicate 248.413759197134
Replicate 357.527726813371


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89341.p2 GENE.S_Transcript_89341~~S_Transcript_89341.p2 ORF type:complete len:235 (+),score=54.08,GcpE|PF04551.10|2.3e-43 S_Transcript_89341:356-1060(+)
ATGGCAACTGGGGCAATTCAATCTCCAGTATGGCATGTGAGGAGCAAAGATTTTGAGTTGGCATCTGTGAGAAATGTTGATTTTGTGAAGATTTCAAATCTTAAAAGGGTTAAGTCTTCAAGAACTAAGACATCTGTGATTAAAAATTCAAACCCGGGTTCTGATATTGCTGAGCTTCAGCCTGCATCGGAGGGAAGCCGTCTATTAGTACCTCGGCAGAAGTATTGTGAGTCTCTGCATAAAACCGTGCGGAGAAAAACTTGCACTGTGATGGTGGGAAATGTGGCCATTGGCAGTGACCACCCTATCAGGATACAGACAATGACAACAACTGATACGAAAGACGTTGCTGCCACAGTTGAACAGGTCATGAGAATTGCTGACAGTGGAGCAGATATTGTTCGAATAACAGTGCAAGGAAAGAAAGAGGCAGATGCATGTTTTGAAATTAAAAACACTCTTGTCCAGAAAAACTACAATATTCCTTTAGTGGCAGATATTCATTTTGCTCCTTCTGTTGCAATGCGGGTTGCTGAATGCTTTGAGAAAATTCGAGTTAATCCTGGGAACTTTGCTGACAGAAGAGCCCAGTTTGAGAAGCTAGATTATACAGACGAGGACTATCAAAAGGAGCTTGAACACATTGAAGAGGTTTTTGCCCCATTGGTTAGAAGTGTAAAAAATATGGTAGAGCTATGCGAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89341.p2 GENE.S_Transcript_89341~~S_Transcript_89341.p2 ORF type:complete len:235 (+),score=54.08,GcpE|PF04551.10|2.3e-43 S_Transcript_89341:356-1060(+)
MATGAIQSPVWHVRSKDFELASVRNVDFVKISNLKRVKSSRTKTSVIKNSNPGSDIAELQPASEGSRLLVPRQKYCESLHKTVRRKTCTVMVGNVAIGSDHPIRIQTMTTTDTKDVAATVEQVMRIADSGADIVRITVQGKKEADACFEIKNTLVQKNYNIPLVADIHFAPSVAMRVAECFEKIRVNPGNFADRRAQFEKLDYTDEDYQKELEHIEEVFAPLVRSVKNMVELCE*

Click here to download the sequence:
Link to NCBI Protein BLAST