Transcript Information: S_Transcript_89552.p1


Annotated TAIR IDAT5G61800.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24830054-24831553 | Reverse length=499
E-Value5.7E-164
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.4426259973435
Replicate 26.3682167251672
Replicate 36.0102026343205
Condition 2: 8 Hour
Replicate 18.3395381128453
Replicate 27.6655868709678
Replicate 37.9785574834288
Condition 3: 24 Hour
Replicate 18.9088072335943
Replicate 27.3013769137953
Replicate 37.8437270310138


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89552.p1 GENE.S_Transcript_89552~~S_Transcript_89552.p1 ORF type:complete len:537 (+),score=99.43,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|0.0039,PPR|PF01535.16|0.002,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|60,PPR|PF01535.16|1.1,PPR|PF01535.16|0.00067,PPR|PF01535.16|0.22,PPR|PF01535.16|0.0073,PPR|PF01535.16|3.3,PPR|PF01535.16|5.5,PPR_2|PF13041.2|1.2e+04,PPR_2|PF13041.2|0.0022,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|0.0056,PPR_2|PF13041.2|5.6e-06,PPR_2|PF13041.2|7.8e+02,PPR_2|PF13041.2|0.00011,PPR_2|PF13041.2|3.3,PPR_2|PF13041.2|46,PPR_2|PF13041.2|28,PPR_2|PF13041.2|1.8e+02,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|12,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|2.7e+03,PPR_3|PF13812.2|8.8e+02,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|25,PPR_3|PF13812.2|8.5e+03,PPR_3|PF13812.2|46,PPR_1|PF12854.3|49,PPR_1|PF12854.3|0.099,PPR_1|PF12854.3|0.091,PPR_1|PF12854.3|0.0073,PPR_1|PF12854.3|78,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|0.73,PPR_1|PF12854.3|3.2e+03,PPR_1|PF12854.3|5.8e+03 S_Transcript_89552:974-2584(+)
ATGATCGGGGCAAGGGACAAGAAGAAGCAGTTGGTGTTGGATTCTTTGAAGCATTGTAAAACCTTTTGTCAGCTCCACCAAGTCCATGGTCATGCTATTACTACAGGTATCCTGAATCAACACCCTTGTTCTATCTTTCCAAACATCTTATGCACAATTACCCGCCTCACTGCGGCTACCCACATGTTGGCTTCCACTTGTCATGGCCATAGTGTGATGACCTATGCTTTTTCAGTGTTCAACCACATTAGAAACCCAACCACTTTCTGCTACAACACAATGATGCGAGCCCTGACCCTCTTATCTGCTCCTGCATCAACACTCCTCCTCTTCACCCATATGTACCGCCTTTCTGTTCCTCCTGACTTCTACACTTTTCCATTTGCCATTAAGGCCTCTGGCCACCTCCGTTTGCCTTCAATTGCTGCTGCACTTCATTCCCAAACCATGAAATTTGGCTTTATATCTGACATATTTATTCTCAATTCCATAATTCATGTTTATGCTAAATGTGATCGGCTCAGGGATGCACTATCGATCTTTGAAGAATATGACCATAAGGATATCGTGTCACACAATGCATTGATTGATGGCTTTATAAAGGCTGGAGACACCATACAATCGCGTGCACTCTTTGATAGAATGACTGTTCGTGATGCTGTCTCTTGGGGTACTCTCATGGCTGGCTATGCCAAAATGAACCAATGCCAGGAGGCCATTGACCTCTTTAATAGCATGCTTCATTCTCCATCTGGAGTTTGTCCAGACAACATTGCCTTGGTCTCAGTTCTTTCTTCCTGTGCACAACTTGGGGATCTGGAGCAAGGCAGAGCAGTCCATGATTATATCGTGGATAATAAAATACTGGTAGATTCCTTCTTATCAACTGGCTTGGTGGACTTGTATGCAAAGTGTGGCTGCATTGAGACTGCTATACAGATATTTGAAACAAGTCCAGAGAAAAATTTGACCACATGGAATGCTATGTTAATGGGGCTTGCGGTGCATGGCCATGGAAGATCATCCGTTGATTGCTTCCACAGTATGATAAATGATGGGCTTCAACCAGATGGACTCAGCTTCTTAGCAGTCCTGGTTGGATGCAGTCATGCAGGCCTCATTTGTGAAGCTCATAAACTTTTTCAGAATATGGAATCTGTGTATGGGGTTCCTCGAGAGCTAAAGCACTATGGCTGCATGGCTGATTTGCTCGGACGTGCTGGTCTGATAAGAGAAGCGCTGGAAATGATTGAACAGATGCCCATGCAGGGTGACATCTATACATGGGGAGGCTTGCTTGCTGGCTGCAGAAAACATGGGCTGCTTGAAATTGCAGAGGACATAGCCAAGTATTTGCAGAATTCAAACACTGAAGATGCTGGGGTTTACTCGGTAATGGTTAATATATATGCCACTTCAGGTATGTGGGATGATGTTGCCAAGACTCGGAGTTTGTTGAGGACAAGAAAGGTCAAGAAAAATGCTGGGTATAGCTCAATTAAATTGAACGGTGTCACTCATGAGTTCATTGCTAGCGACAATTTGCATCCTCAAACTGATGAGATCTATATGGTTCTGAGTGGACTTGGAAGTCTTGGAATTGAAGCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89552.p1 GENE.S_Transcript_89552~~S_Transcript_89552.p1 ORF type:complete len:537 (+),score=99.43,PPR|PF01535.16|1.3e+02,PPR|PF01535.16|0.0039,PPR|PF01535.16|0.002,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|60,PPR|PF01535.16|1.1,PPR|PF01535.16|0.00067,PPR|PF01535.16|0.22,PPR|PF01535.16|0.0073,PPR|PF01535.16|3.3,PPR|PF01535.16|5.5,PPR_2|PF13041.2|1.2e+04,PPR_2|PF13041.2|0.0022,PPR_2|PF13041.2|0.26,PPR_2|PF13041.2|0.0056,PPR_2|PF13041.2|5.6e-06,PPR_2|PF13041.2|7.8e+02,PPR_2|PF13041.2|0.00011,PPR_2|PF13041.2|3.3,PPR_2|PF13041.2|46,PPR_2|PF13041.2|28,PPR_2|PF13041.2|1.8e+02,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|12,PPR_3|PF13812.2|2.1,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|4e+02,PPR_3|PF13812.2|2.7e+03,PPR_3|PF13812.2|8.8e+02,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|25,PPR_3|PF13812.2|8.5e+03,PPR_3|PF13812.2|46,PPR_1|PF12854.3|49,PPR_1|PF12854.3|0.099,PPR_1|PF12854.3|0.091,PPR_1|PF12854.3|0.0073,PPR_1|PF12854.3|78,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|1.1e+02,PPR_1|PF12854.3|0.73,PPR_1|PF12854.3|3.2e+03,PPR_1|PF12854.3|5.8e+03 S_Transcript_89552:974-2584(+)
MIGARDKKKQLVLDSLKHCKTFCQLHQVHGHAITTGILNQHPCSIFPNILCTITRLTAATHMLASTCHGHSVMTYAFSVFNHIRNPTTFCYNTMMRALTLLSAPASTLLLFTHMYRLSVPPDFYTFPFAIKASGHLRLPSIAAALHSQTMKFGFISDIFILNSIIHVYAKCDRLRDALSIFEEYDHKDIVSHNALIDGFIKAGDTIQSRALFDRMTVRDAVSWGTLMAGYAKMNQCQEAIDLFNSMLHSPSGVCPDNIALVSVLSSCAQLGDLEQGRAVHDYIVDNKILVDSFLSTGLVDLYAKCGCIETAIQIFETSPEKNLTTWNAMLMGLAVHGHGRSSVDCFHSMINDGLQPDGLSFLAVLVGCSHAGLICEAHKLFQNMESVYGVPRELKHYGCMADLLGRAGLIREALEMIEQMPMQGDIYTWGGLLAGCRKHGLLEIAEDIAKYLQNSNTEDAGVYSVMVNIYATSGMWDDVAKTRSLLRTRKVKKNAGYSSIKLNGVTHEFIASDNLHPQTDEIYMVLSGLGSLGIEA*

Click here to download the sequence:
Link to NCBI Protein BLAST