Transcript Information: S_Transcript_89555.p1


Annotated TAIR IDAT4G01020.1
Annotated Gene Namehelicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:439086-445043 | Forward length=1787
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.595982174261
Replicate 214.352476901911
Replicate 314.717241816296
Condition 2: 8 Hour
Replicate 19.3513675959381
Replicate 29.5612575154758
Replicate 39.1218067936731
Condition 3: 24 Hour
Replicate 117.772520680717
Replicate 215.588464723631
Replicate 314.9900631189


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89555.p1 GENE.S_Transcript_89555~~S_Transcript_89555.p1 ORF type:5prime_partial len:1797 (+),score=329.82,Helicase_C|PF00271.27|3e-13,Helicase_C|PF00271.27|1.6e+04,OB_NTP_bind|PF07717.12|5.2e-11,HA2|PF04408.19|9.9e-10,IBR|PF01485.17|7.2e+03,IBR|PF01485.17|1.6e+04,IBR|PF01485.17|1.3e-06,IBR|PF01485.17|0.00027,DEAD|PF00270.25|6.9e-06 S_Transcript_89555:1-5391(+)
CCTCCCCCCTACCATTCAATCTTCTTCTCTCACAGTACAAACGTCTGGATTCTTCCCCTTCCTATTTCTCCTCTTTTCTTTTTCAGTCCACTAATTCTACCTTCTCTCTTCTCCAAAAAAACCTCACTCTGTCACTCCCCCACCAAACACACACGCTCACACCTGCCAACCACTCACTCTATTTCTCTTTTTTCCCCGATGAGGCGAACAGACTACTCAACGACGACGTCGAATTTCCGATCCCCAAGGCCGGCGTACAACAACCGGAAACCTACTTTCCCGGCGAATTTCCGTCAACACAGGCCACCAGACCCTCCTCCTCGGCCGAATTTCATCGTCGAGCTCCATTCCTGTCCCTCCACCCATCATAGAACCTCCGTCGAGGGTTTAATCAAACAATGCGACTCCTCACCGGAAAATTACTTCATCTTCGACTCCGGCGCCGTCGCTGGACGCCTCTTCTTCTCTCAGTGGACTTCCGCCCTTGAATCCGTCGTCGGATTATGGACCTCCTGCCTCTCCGGTTTCCACAACCTCACCCCCTGCCTAATTGCCAACGTGAAGGTCCCATCCGACGAGGATGAGCTCAACGACCGTCTTAAACCCCTCTTCTCCAACAAACTCCGGAGTCTTCTCTCCGGTGAATCCGTCAACAAGTGGCAGAACAAGCTCCTCCAACTCGACGGCGAAATCGGTGCCGTTACTTCCGCCTTGAGGAAAAGAAACTCATTGCGGTTCTTGGAGGAGCTTATCAACAAGAAGAAAGTCCTTATAAGCGAGAAAGATTTGGTCCTTAAAAGGATTGACGAGTTTAGGTCGGCTTTGTATTGTATACTTGACCACGTTGAGGGCTGTGGTTCTATGTTTCTTGAACATGACAGGGTCCCACCTTTCCGGTTTGGTAGCGGGTTTGACTGGCAGAGGATTTATCATCTCATGATGAGGGAGTGTCGGAGACTTGAGGATAGCTTGCCTATTTATGCCTTTCGACAAGATATTCTTCAGCATATCACTTCGCAGCAGATTATGGTATTGATTGGGGAGACTGGATCAGGAAAAAGTACCCAGTTGGTGCAGTTTCTCACTGATTCAGGGGTGGTCACTGATGGATCTCTTGTATGCACTGAGCCAAGGAAGATTGCCGCTATTTCGCTAGCAGAGAGAGTTCAAGAAGAAAGTTATGGTTGCTATGAGAAAAATGCAATTCACTGTGAGCTATCATATTCATCTGCTCAGCAGCTTAAGGGCAAGTTAATATACATGACAGACCACTGTTTATTGCAGCACTGCATGAATGACAGAAACTTGCATGGTGTTTCCTGCATACTTGTAGATGAAGCTCATGAAAGAAGCCTAAATACTGATCTGCTTTTGGCCCTGCTTAAGAATTTACTTCCTCCGAGGCCTGACCTGAGGCTTATCATCATGTCTGCCACAGCTGATGCTAATCAACTTTCAAAATACTTCTTTGGGTGCGGAATGTTTACGGTAGTTGGCAGAAACTTTCCTGTTGATATAAAATATGTACCTGGCTTGTCTGAAGGAACCTCTTTCTCTGCAATGGTGTCTACCAGTAATGTAGCCCCCTATGTATCAGATACTGTTAGGCTGGTAACTGATATTCATAGAACTGAGCGAGAAGGAACTATTCTTGCGTTTTTGACATCTCCACTGGAAGTTGAATGGGCTTGTGAAAAGTTTGTAGCACCCAATGCTGAACCTTTACCTTTGCATGGCAAGCTTTCATATGAAGAGCAATTGCGTGTGTTCCAGGACTACCCAGGAAAAAGAAAAGTTATATTTGCTACAAATGTCGCTGAAACATCATTGACAATCCCAGGGGTCAAGTATGTCGTTGATTCCGGCATGGCTAAAGAGAGCAGGTTCGAACCTGGTTCTGGCATGAACGTCCTGAGGGTCTGCTGGATCAGCAAGAGTTCTGCCGCTCAACGAGCTGGCCGCGCTGGGAGGACTGGACCGGGACGGTGTTACCGACTCTACTCACAAGATGACTTTCATTTGATGGCTGCTCAGCAGGAACCTGAGATTCGTAGAGTTAATTTGGGTCTTGCTGTCTTGAAGATTGCTGCCCTGGGTGTTAGGAACATACTGGAGTTTGACTTTGTTGATGCTCCCAACCCGGAAGCCATCGATATGGCAATCCGGAATCTCACACAGTTGGGAGCTGTCACTTTGAAAAACGGTGATATTGAGTTGACTGACCAAGGTCGCCATCTGGTTAAACTGGGCATCGAGCCACGATTGGGGAAATTGATGCTTGGCTGCTGCAGTCAGCATCTGAGAAGAGAAGGTCTTGTACTTGCTGCTGTTATGGCAAATTCTAGCAGTATCTTTTGCCGAGTTGGTAATCATGCAGAGAAGCTAAAGTCTGACTGCCTCAAGGTGCCATTCTGTCACCGTGATGGGGATCTCTTTACTCTGCTCTCTGTTTACAAAGCATGGCAGGATGTACCACGGGATAAGAGGAATAAGTGGTGTTGGGAGAACAGCATCAACGCCAAATCTATGCGAAGATGCCAAGACACCGTATTGGAATTGGAGAATTGTCTAAAAAATGAACTCCGCATCATTGTTCCAAGTTACTGGTATTGGAAGCCCGAGGAAACCACACAGTATGACAAAAATCTGAAGAAGGCCATACTGGCTTCACTTGCTGAAAATGTAGCAATGTACTCTGGCTGTGATAAACTTGGCTATAAAGTGGCATTGACTGGTCAGCATGTTCAGCTGCATCCTGCCTGTTCTTTGCTCATGTTCAATAATAAGCCTGATTGGGTTGTCTTTGGTGACATATTGTCTGCATCTGATCAATATTTGGTATGCGTGACTGCATTTGACCAGGAGTTCTTATCGTCTCTTAGCCCTCCTCCTCTCTTTGATGCCTCTGAAGTGGAGAGCCAGAAACTAGAAATGACAACGTTATCTGGTTTTGGCAAGACTCTTCTTAAGAAGTTCTGTGGGAGATCTAACAATGGTTTGCTTTGTCTTGTGTCAAGAATCAGGAAAAACTGCGGTGATGATAGAATACGCATTGAAGTTGACGTTGACAATAATCAGGTTCGGTTATTTTCTCCATCACAAGATACAGACAACATCTTGAATCATGTGAGGAATGCCTTGGACAGTGAAAGAAGATGGTTGCAGAGCGAATGCATGGAGATGTGCCTATATCACGGTGGTCCTGGTCTATTCCCTCCGGTTGCATTGTTTGGCTCTGGAGCTGAAATCAAACATCTAGAGATCAATAAGAGATGCTTGACTGTTGATGTATTTTACCCTAATGTCACTGTTGTGGATGATAAGGAGCTTATGATGTTTGTTGAAAAATATGCCCCAGGAATATGTGCTGTCCACAAGTCTACAGCTCAAACTCAAGAGATGGGAGAGAGAGACAAGTGGGGCAGTATTACATTTCTGACCCCTGATGCTGCTGAAAGGGCGGCTGAGTTGAACAAAGTCGAGTTTAATGGTTCCCTGATGAATGTAAATCTTTCAGGGGCTACATTTGGAGCAGATCGGGCCTTTTCATATCCTGCTGTCAAAGCAAAAGTGTCCTGGCCACGTAGGTTCAGTAAAGGCTTTGCATTTGTTAGATGTGAAGCTCATGATGTTGACATAATGATTTCACATTTCTCTGATCTGCGAATTGGACAAAGATATGTCAGGTGTAAACCTAGCCATAAGTATCCGGATTCTATTGTACTAACTGGAATTGACAAGCAAGCTTCTGAACCAGAGATCTTGTATGCATTGAGGAATGCTACAGACAGGAAAATCCTGAACTTCAATTTGATGAGGGAAGATGCTGTAGACAGTCTGCCTCTTCATGCCTGTGAAGAGATTCTGTTCAGAGAAATTTCTGTTTTCATGCCCAGAGGAAGCCCTCAGATTAATCATTGTAGAGTCCAGGTCTTTCCGCCAGAACCAAAGGATCACTGTATGAAAGCTTTGATTACATTTGATGGAAGGCTAAATTTGGAAGCGGCAAAAGCATTGGAGCAGATTGAAGGCAAGGCTTTACCTGGTTTCCAGCCATGGCAGAAAATACAGTGCCAGCAATTATTTCATTCTTCAGTGTCGTGTCCTTCCTCGGTATACTTCGTTATCAAGAAAGAGCTTGATTCATTGGTTGCCAGCTTCAAAAGTAAAAGTGGGGCAGATTGCATCTTCATCAATGCAAATGGTTCTTGTCGAGTGAGGATATCAGCCACAGCAACAAAAACGGTGGCGGAATTGAGGAAGCCTCTAGAAGAGCTGATGAAAGGGAGGACCATTACTCATGCTGGCCTCACTCCATCTGTTCTACAGCTTCTATTTTCTAGAGATGGCATTGCATTGATGAAGTCCCTTCAGCAAGAGATGGGAATCTATATGATATTTGAAAGACATAGCCTCAGTGTTAGGATTTTTGGGCCTTCTGATAGGATTGTTGTGGCAGAGGAGAGATTTATTCAGCGTCTTCTGAACCTCCATGAAAATAAGCAACTGGAGATCCATCTACGTGGAGTTAATCTGCCTTATGACTTGATGAAGGAAGTTGTGAAGAGGTTGGGTCCTAACCTAGATGGGCTAAAAGCAAAGGTACCTGAAGCTGAGTTCACTCTTGACACACGTCGTCACGTGATTTCCATTTCTGGTACTAAAGAAGCAAAGCAGAAGGTGGAACAGATTGTCAGTGAGATTGCACAAGCAAGTGGTCATTTGAGTAACAGTGAGATACTCAGTGAAAAGGCCTGCCCAATTTGCTTGTGTGATGTGGAGGATGAGTATCAGCTTGAAAACTGCTTGCATGTCTTCTGCAGGTCATGCTTGGTGGAGCAATGTGAGTCTGCTATCAAAAACTATGATAGCTTCCCAATTTGTTGTGCGCATGGGGGCTGTGGGCTTCCATTTTTGCTTGTAGATTTGAAAGCCTTGTTGTCTGGTAAGAAGTTAGACGAGCTTTTTATGGCTTCTTTGGGGGCGTTTGTGGCATCAAGTTGTGGCAAGTACAGATTCTGCCCTTCCCCTGATTGTCGTTCTGTTTATCAGGTAGCGGGACCTGATAAATCAGAGGAGGCTTTTGTCTGTGGAGCTTGCTATGCTGAGACTTGTACCAAGTGTCATTTAGAGTATCACCCATACTTATCTTGTGAACGGTACAAGGAGTACAAGGAGGATCCAGATGCTTCCTTGAAAGAGTGGTGCAGAGGGAAGGAAGAATATGTTAAGAGGTGCCCAGTGTGTGGCTATAACATTGAGAAGGCTGAAGGGTGCAACCATGTTGAATGTCGGTGCGGGAAACATCTATGTTGGGTCTGTTTGGAGCACTTCCCCAGTAGTGACGATTGCTATGGCCATTTAAGGGCCATTCACAAAGGTATCACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89555.p1 GENE.S_Transcript_89555~~S_Transcript_89555.p1 ORF type:5prime_partial len:1797 (+),score=329.82,Helicase_C|PF00271.27|3e-13,Helicase_C|PF00271.27|1.6e+04,OB_NTP_bind|PF07717.12|5.2e-11,HA2|PF04408.19|9.9e-10,IBR|PF01485.17|7.2e+03,IBR|PF01485.17|1.6e+04,IBR|PF01485.17|1.3e-06,IBR|PF01485.17|0.00027,DEAD|PF00270.25|6.9e-06 S_Transcript_89555:1-5391(+)
PPPYHSIFFSHSTNVWILPLPISPLFFFSPLILPSLFSKKTSLCHSPTKHTRSHLPTTHSISLFSPMRRTDYSTTTSNFRSPRPAYNNRKPTFPANFRQHRPPDPPPRPNFIVELHSCPSTHHRTSVEGLIKQCDSSPENYFIFDSGAVAGRLFFSQWTSALESVVGLWTSCLSGFHNLTPCLIANVKVPSDEDELNDRLKPLFSNKLRSLLSGESVNKWQNKLLQLDGEIGAVTSALRKRNSLRFLEELINKKKVLISEKDLVLKRIDEFRSALYCILDHVEGCGSMFLEHDRVPPFRFGSGFDWQRIYHLMMRECRRLEDSLPIYAFRQDILQHITSQQIMVLIGETGSGKSTQLVQFLTDSGVVTDGSLVCTEPRKIAAISLAERVQEESYGCYEKNAIHCELSYSSAQQLKGKLIYMTDHCLLQHCMNDRNLHGVSCILVDEAHERSLNTDLLLALLKNLLPPRPDLRLIIMSATADANQLSKYFFGCGMFTVVGRNFPVDIKYVPGLSEGTSFSAMVSTSNVAPYVSDTVRLVTDIHRTEREGTILAFLTSPLEVEWACEKFVAPNAEPLPLHGKLSYEEQLRVFQDYPGKRKVIFATNVAETSLTIPGVKYVVDSGMAKESRFEPGSGMNVLRVCWISKSSAAQRAGRAGRTGPGRCYRLYSQDDFHLMAAQQEPEIRRVNLGLAVLKIAALGVRNILEFDFVDAPNPEAIDMAIRNLTQLGAVTLKNGDIELTDQGRHLVKLGIEPRLGKLMLGCCSQHLRREGLVLAAVMANSSSIFCRVGNHAEKLKSDCLKVPFCHRDGDLFTLLSVYKAWQDVPRDKRNKWCWENSINAKSMRRCQDTVLELENCLKNELRIIVPSYWYWKPEETTQYDKNLKKAILASLAENVAMYSGCDKLGYKVALTGQHVQLHPACSLLMFNNKPDWVVFGDILSASDQYLVCVTAFDQEFLSSLSPPPLFDASEVESQKLEMTTLSGFGKTLLKKFCGRSNNGLLCLVSRIRKNCGDDRIRIEVDVDNNQVRLFSPSQDTDNILNHVRNALDSERRWLQSECMEMCLYHGGPGLFPPVALFGSGAEIKHLEINKRCLTVDVFYPNVTVVDDKELMMFVEKYAPGICAVHKSTAQTQEMGERDKWGSITFLTPDAAERAAELNKVEFNGSLMNVNLSGATFGADRAFSYPAVKAKVSWPRRFSKGFAFVRCEAHDVDIMISHFSDLRIGQRYVRCKPSHKYPDSIVLTGIDKQASEPEILYALRNATDRKILNFNLMREDAVDSLPLHACEEILFREISVFMPRGSPQINHCRVQVFPPEPKDHCMKALITFDGRLNLEAAKALEQIEGKALPGFQPWQKIQCQQLFHSSVSCPSSVYFVIKKELDSLVASFKSKSGADCIFINANGSCRVRISATATKTVAELRKPLEELMKGRTITHAGLTPSVLQLLFSRDGIALMKSLQQEMGIYMIFERHSLSVRIFGPSDRIVVAEERFIQRLLNLHENKQLEIHLRGVNLPYDLMKEVVKRLGPNLDGLKAKVPEAEFTLDTRRHVISISGTKEAKQKVEQIVSEIAQASGHLSNSEILSEKACPICLCDVEDEYQLENCLHVFCRSCLVEQCESAIKNYDSFPICCAHGGCGLPFLLVDLKALLSGKKLDELFMASLGAFVASSCGKYRFCPSPDCRSVYQVAGPDKSEEAFVCGACYAETCTKCHLEYHPYLSCERYKEYKEDPDASLKEWCRGKEEYVKRCPVCGYNIEKAEGCNHVECRCGKHLCWVCLEHFPSSDDCYGHLRAIHKGIT*

Click here to download the sequence:
Link to NCBI Protein BLAST