Transcript Information: S_Transcript_89804.p1


Annotated TAIR IDAT1G04240.1
Annotated Gene NameAUX/IAA transcriptional regulator family protein
Annotated Gene Symbol(s)SHY2, IAA3
Annotation TypeHomolog
Chromosome Positionchr1:1128564-1129319 | Reverse length=189
E-Value1E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.381207421273
Replicate 217.626250353014
Replicate 317.941574776981
Condition 2: 8 Hour
Replicate 115.87814387743
Replicate 213.982405399829
Replicate 310.310382808931
Condition 3: 24 Hour
Replicate 18.6667200805075
Replicate 27.7598920071189
Replicate 39.4582666519185


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_89804.p1 GENE.S_Transcript_89804~~S_Transcript_89804.p1 ORF type:complete len:184 (+),score=35.59,AUX_IAA|PF02309.12|0.64,AUX_IAA|PF02309.12|9e-28,AUX_IAA|PF02309.12|4e-23 S_Transcript_89804:30-554(+)
ATGGAAAATAACAAGAAAGTGTTGTGTTATCATGAGGATACTGAGTTGAGATTAGGCTTGCCAGGAAGAAATGAGGTTGACAAGCAATCAACTACTACAAGGGCAAATAAAAGAGGTTTCTCTAGCATTATCAACGATGAAAATACTCCTGGTACAAGAAAATGCCATGACGATGTAGCGCCACCAACAAAGGCACAAGCAATTGGGTGGCCTCCAGTTAAGTCTTACAGGAAAAATTGCCTTCAAGCAACAAAACTACAAGAGGAAACTAGTACAAGCATCTATGTAAAAGTTAGTATGGATGGTGCTCCTTATCTTAGAAAGATTGACCTAAGACTTTATAAAAGTTACAAGGAGTTTCTTAAGGCATTGGAAGGAATGTTCAAAGTCAAAGATCGTGAGTATGAACCCACTTATGAAGACAAAGATGGAGATTGGATGTTGGTAGGAGATGTGCCTTGGGAAATGTTCATTGGCTCATGCAAGAGGCTTAGGATAATGAAGGGCTTAGATTGTTTGGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_89804.p1 GENE.S_Transcript_89804~~S_Transcript_89804.p1 ORF type:complete len:184 (+),score=35.59,AUX_IAA|PF02309.12|0.64,AUX_IAA|PF02309.12|9e-28,AUX_IAA|PF02309.12|4e-23 S_Transcript_89804:30-554(+)
MENNKKVLCYHEDTELRLGLPGRNEVDKQSTTTRANKRGFSSIINDENTPGTRKCHDDVAPPTKAQAIGWPPVKSYRKNCLQATKLQEETSTSIYVKVSMDGAPYLRKIDLRLYKSYKEFLKALEGMFKVKDREYEPTYEDKDGDWMLVGDVPWEMFIGSCKRLRIMKGLDCLA*

Click here to download the sequence:
Link to NCBI Protein BLAST