Transcript Information: S_Transcript_8985.p1


Annotated TAIR IDAT5G42140.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16837547-16841640 | Reverse length=1073
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0733288228444
Replicate 22.3518709680599
Replicate 31.0766064211239
Condition 2: 8 Hour
Replicate 12.3815156699336
Replicate 22.7538950736719
Replicate 31.4607306734378
Condition 3: 24 Hour
Replicate 11.4415405349123
Replicate 22.4159393050929
Replicate 31.0242454580758


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_8985.p1 GENE.S_Transcript_8985~~S_Transcript_8985.p1 ORF type:complete len:788 (+),score=159.14,RCC1|PF00415.14|35,RCC1|PF00415.14|6.2e-14,RCC1|PF00415.14|3.3e-12,RCC1|PF00415.14|0.00011,RCC1|PF00415.14|5.3e-13,BRX|PF08381.7|1.6e-29,BRX_N|PF13713.2|2.6e-20,RCC1_2|PF13540.2|0.0013,RCC1_2|PF13540.2|0.0057,RCC1_2|PF13540.2|0.15,RCC1_2|PF13540.2|5.1e-06,FYVE|PF01363.17|7.5e-15 S_Transcript_8985:1222-3585(+)
ATGGCACTCATAATGCTGGTCTCCTCGGTCATGGCACTGAAGTCAGTCACTGGATACCAACTTGAAGGCCTTCAAGTGGCGTCAGTAACTTGTGGTCCTTGGCATACTGCAATAATAACATCGACTGGGCAGCTTTTTACGTTTGGAGATGGGACTTTTGGTGTCTTGGGCCATGGAGACCGTGAAAATGTTCCTTATCCAAGGGAGGTGGAGTCTCTATCTGGTTTGAGGACAATTTCTGTTGCATGTGGGGTTTGGCATACAGCAGCTGTTGTTGAAGTTATTGTAACTCAATCCAATTCGAGTGTTTCATCGGGGAAATTATTTACTTGGGGTGATGGTGATAAGAATCGTCTTGGTCAAGGTGACAAGGAACCCCGGCTGAAACCAACTTGTGTACCGTCACTTATTGAGTACAACTTTCAAAAAGTTGCTTGTGGGCATAGCTTAACTGTTGGATTGACCACATCAGGTCATGTTTTTACCATGGGGAGTACAGTTTACGGTCAGCTAGGGAATCCGTTTGCTGATGGAAAATTACCTTGTTTGGTCGAAGACAGGCTTGCTGCTGAGACTGTTGAAGAGATTGCTTGTGGTGCATATCACGTGGCAGTGTTAACTTCCAGGAATGAGGTTTATACATGGGGAAAGGGAGCTAATGGGAGGCTGGGTCATGGAGACATCGAAGACCGAAAAGCACCAACTTTGGTTGAGGCTTTGAAAGATAGACATGTTAAATATATTACTTGTGGTTCAACATACACGGCAGCTATATGTCTTCACAAATGGGTATCTGGTGCCGAGCAATCCCAGTGTTCTTCTTGTAGACAGGCTTTTGGATTTACTCGAAAAAGGCATAATTGCTACAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCAAAGAAAGCACTACGAGCTGCACTTGCTCCAAATCCTAGCAAACCATATCGTGTGTGTGATTCTTGTTATGCCAAACTGATTAAAGTTTCAGAAACTGGTAGCAGTAGAGGAAAAAGTTCTGGGCCTCGGCTCTCAGGTGAAAACAAAGATAGGTTAGATAAGGCTGAGCTACGGCTGTCGAAGTCTATGTTGCCTTCAAATCTTGATCTCATCAAGCAATTAGATACGAAAGCTGCCAAACAGGGAAAGAAATCTGAGACATTCTCGTTGGTTCAGAGTCAGACTTCCCAAACCCCTTCCTTGTTACAGCTGAAAGATGTTGTTTTATCTGGCAGTAATGATGTGAAGCAAACAATACCAAGGCCAATTGCGACAGCTAGTTCCATTTCAAGACCTGTGTCTCCTTTCTCAAGGAAGCCAAGTCCTCCACGTTCTGCTACTCCAGTTCCAACTACTTCTGGCTTGTCGTTCTCCAAAAGCATTGCTGACAGTTTGAAAAAAACTAACGAGCTCCTAAATCAGGAAGTAATTAAATTGCGTTCGCAGGTATTTCTTATAGTTCCCATCATGTGTCTCAGTCATTTGAATCCTGTGCTGATGGTCTTGTATGTGGAAAAGGTTGATAGCTTGCGGCAGCGTTGTGAACTTCAAGAGTTAGAGCTTCAAAAGTCAACTAAGAAAACTCAAGAAGCTATAGCCCTCGCAGCAGAAGAATCTGCAAAGACTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTGCACAGCTCAAAGATATGGCTGAGAGGTTACCTCCAGGAGCTTATGACTCAGAGACAATAAAACTTCCTCAACTACCAAATGGTTTTGAGTCAAATGGCATTCATTTCTCTGATGCAAGTGGCGAGCGCCTCTTGAAATCTGATGCCACGAATGGCTCATACCTGGCATCAGCAACTGGAGGCGACTCAATGACGAATGGAACTCAAGGGACTCTTCAGTCAGCCAGGGAATCATATATGCTCAATGAGAAAAGTTACCAGCCGAATTCTGGATTTGCATTGTCAAACACCAGAGATGATGAACAGAATGCTGCTGGCGGGCTCCTGACATGTAGCAGTAATGTGTCTGATGCCTCTAATGCACGGGAATCTGCAGTTAGTCAAGACAGTCTGAATGGTTTCAGGTCGAAAAGCCCTGTCCCTGTAGGTTCTAACAATCAAGTTGAAGCCGAGTGGATTGAACAGTATGAACCTGGTGTGTACATAACTTTAGTTGCCCTTCGAGATGGAACTAGAGATCTGAAACGAGTGCGCTTCAGCCGAAGAAGATTTGGGGAGCACCAAGCGGAAACATGGTGGTCGGAGAATCGTGAAAAGGTATATGAAAGATATAACGTTCGTGGGTCAGACAAGACATCAGTATCCGGACAAACTGCAAGACGATCAGAAGGCGGATTGTCACCTACGTCTTCTCACCATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_8985.p1 GENE.S_Transcript_8985~~S_Transcript_8985.p1 ORF type:complete len:788 (+),score=159.14,RCC1|PF00415.14|35,RCC1|PF00415.14|6.2e-14,RCC1|PF00415.14|3.3e-12,RCC1|PF00415.14|0.00011,RCC1|PF00415.14|5.3e-13,BRX|PF08381.7|1.6e-29,BRX_N|PF13713.2|2.6e-20,RCC1_2|PF13540.2|0.0013,RCC1_2|PF13540.2|0.0057,RCC1_2|PF13540.2|0.15,RCC1_2|PF13540.2|5.1e-06,FYVE|PF01363.17|7.5e-15 S_Transcript_8985:1222-3585(+)
MALIMLVSSVMALKSVTGYQLEGLQVASVTCGPWHTAIITSTGQLFTFGDGTFGVLGHGDRENVPYPREVESLSGLRTISVACGVWHTAAVVEVIVTQSNSSVSSGKLFTWGDGDKNRLGQGDKEPRLKPTCVPSLIEYNFQKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPFADGKLPCLVEDRLAAETVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKYITCGSTYTAAICLHKWVSGAEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPSKPYRVCDSCYAKLIKVSETGSSRGKSSGPRLSGENKDRLDKAELRLSKSMLPSNLDLIKQLDTKAAKQGKKSETFSLVQSQTSQTPSLLQLKDVVLSGSNDVKQTIPRPIATASSISRPVSPFSRKPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVIKLRSQVFLIVPIMCLSHLNPVLMVLYVEKVDSLRQRCELQELELQKSTKKTQEAIALAAEESAKTKAAKEVIKSLTAQLKDMAERLPPGAYDSETIKLPQLPNGFESNGIHFSDASGERLLKSDATNGSYLASATGGDSMTNGTQGTLQSARESYMLNEKSYQPNSGFALSNTRDDEQNAAGGLLTCSSNVSDASNARESAVSQDSLNGFRSKSPVPVGSNNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRGSDKTSVSGQTARRSEGGLSPTSSHH*

Click here to download the sequence:
Link to NCBI Protein BLAST