Transcript Information: S_Transcript_8986.p1


Annotated TAIR IDAT5G42140.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16837547-16841640 | Reverse length=1073
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.8644882470694
Replicate 24.6787992051873
Replicate 34.9911575026603
Condition 2: 8 Hour
Replicate 17.5310606443824
Replicate 27.3844966228734
Replicate 38.2085872764524
Condition 3: 24 Hour
Replicate 14.7876541456759
Replicate 24.5046085120691
Replicate 34.1626444182357


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_8986.p1 GENE.S_Transcript_8986~~S_Transcript_8986.p1 ORF type:complete len:1127 (+),score=248.40,RCC1|PF00415.14|0.03,RCC1|PF00415.14|3.8e-10,RCC1|PF00415.14|1.3e-09,RCC1|PF00415.14|9.5e-14,RCC1|PF00415.14|5.1e-12,RCC1|PF00415.14|0.00017,RCC1|PF00415.14|8.1e-13,BRX|PF08381.7|2.4e-29,RCC1_2|PF13540.2|7e+03,RCC1_2|PF13540.2|1.4e+03,RCC1_2|PF13540.2|0.0064,RCC1_2|PF13540.2|3.2e-07,RCC1_2|PF13540.2|0.0019,RCC1_2|PF13540.2|0.0087,RCC1_2|PF13540.2|0.23,RCC1_2|PF13540.2|7.7e-06,BRX_N|PF13713.2|4e-20,FYVE|PF01363.17|1.2e-14,PH_12|PF16457.1|1.3e-06,PH_12|PF16457.1|6.4e+02 S_Transcript_8986:150-3530(+)
ATGGCAGATCTTGTTAGCTATGGTAATTCCCATCGTGACATTGAGCAGGCATTAATTGCTTTGAAGAAGGGTGCTCAGTTACTTAAATACGGTCGCAAGGGAAAGCCCAAATTTTGTCCATTTAGACTTTCTAGTGATGAAACAACTCTGATTTGGTTATCTAGTGGCAGGGAGAAAAGTATTAAGTTATCTTGTGTGTCAAGAGTAATTCCTGGGCAGAGAACTGCTGTTTTTAGAAGGTATTTGCGCCCAGACAAGGATTATTTATCATTTTCCCTTATTTACAACAACGGAAAACGATCTCTTGATCTGATTTGCAAGGATAAAGTCGAGGCTGAGGTGTGGATTGCAGGTCTCACAGCACTTATTGCTGCTGCGAAGGGTGGCCGGTCGAAAATTGATGGATGGAATGATGAAGGCCTTTCCTTCCAGGACAACAGAGACTTGATATCAAGCAGTCCAAGTGACAGTTCGGCTACTCTTACACGATATCTTAGCTCTCCTGAGGGTTCTCTCAGTTTTCATGGTGGTTTATCTCCGAAGCGGAATCAGTTTGAGAATTTTATGCCTTCTGAGAAATCACATGTAGCTTTAGATAATAAAAATATGCAAGCAAAAGGACCGGGTTCAGATGTTTTCCGAGTTAGTGTTTCTAGTGCACCTAGCACTTCTAGTCATGGTTCTGCAGGTGATGATTGTGATGCTCTTGGTGATGTGTACATTTGGGGTGAGGTTATATGTGATAATTCTTCCAGACTTGGGGCTGAGAAAAATGTAAATTTTGTTGGCACAAGAGCAGATCTCCTTCTTCCTAAGCCATTGGAGTCTAATGTGGTTTTGGATGTTCACAACATAGCTTGTGGTGTCAGGCATGCTTCCCTTGTCACTCGGCAAGGTGAAGTTTTCACTTGGGGTGAGGAATCTGGAGGTAGGCTGGGACATGGTGTAGAAAAGGATGTTCTTCAACCTCGTCTTGTTGAATCATTAGCTGCTTATAACGTTGATTTTGTCGCATGTGGTGAGTTTCATACCTGTGCTGTAACATTTTCTGGTGAGTTGTACACATGGGGTGATGGCACTCATAATGCTGGTCTCCTCGGTCATGGCACTGAAGTCAGTCACTGGATACCAAAGAGAATTGCTGGACCTCTTGAAGGCCTTCAAGTGGCTTCAGTAACTTGTGGTCCTTGGCATACTGCAATAATAACATCGACTGGGCAGCTTTTTACGTTTGGAGATGGGACTTTTGGTGTCTTGGGCCATGGAGACCGTGAAAATGTTCCTTATCCAAGGGAGGTGGAGTCTCTATCTGGTTTGAGGACAATTTCTGTTGCATGTGGGGTTTGGCATACAGCAGCTGTTGTTGAAGTTATTGTAACTCAATCCAATTCGAGTGTTTCATCGGGGAAATTATTTACTTGGGGTGATGGTGATAAGAATCGTCTTGGTCAAGGTGACAAGGAACCCCGGCTGAAACCAACTTGTGTACCGTCACTTATTGAGTACAACTTTCAAAAAGTTGCTTGTGGGCATAGCTTAACTGTTGGATTGACCACATCAGGTCATGTTTTTACCATGGGGAGTACAGTTTACGGTCAGCTAGGGAATCCGTTTGCTGATGGAAAATTACCTTGTTTGGTCGAAGACAGGCTTGCTGCTGAGACTGTTGAAGAGATTGCTTGTGGTGCATATCACGTGGCAGTGTTAACTTCCAGGAATGAGGTTTATACATGGGGAAAGGGAGCTAATGGGAGGCTGGGTCATGGAGACATCGAAGACCGAAAAGCACCAACTTTGGTTGAGGCTTTGAAAGATAGACATGTTAAATATATTACTTGTGGTTCAACATACACGGCAGCTATATGTCTTCACAAATGGGTATCTGGTGCCGAGCAATCCCAGTGTTCTTCTTGTAGACAGGCTTTTGGATTTACTCGAAAAAGGCATAATTGCTACAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCAAAGAAAGCACTACGAGCTGCACTTGCTCCAAATCCTAGCAAACCATATCGTGTGTGTGATTCTTGTTATGCCAAACTGATTAAAGTTTCAGAAACTGGTAGCAGTAGAGGAAAAAGTTCTGGGCCTCGGCTCTCAGGTGAAAACAAAGATAGGTTAGATAAGGCTGAGCTACGGCTGTCGAAGTCTATGTTGCCTTCAAATCTTGATCTCATCAAGCAATTAGATACGAAAGCTGCCAAACAGGGAAAGAAATCTGAGACATTCTCGTTGGTTCAGAGTCAGACTTCCCAAACCCCTTCCTTGTTACAGCTGAAAGATGTTGTTTTATCTGGCAGTAATGATGTGAAGCAAACAATACCAAGGCCAATTGCGACAGCTAGTTCCATTTCAAGACCTGTGTCTCCTTTCTCAAGGAAGCCAAGTCCTCCACGTTCTGCTACTCCAGTTCCAACTACTTCTGGCTTGTCGTTCTCCAAAAGCATTGCTGACAGTTTGAAAAAAACTAACGAGCTCCTAAATCAGGAAGTAATTAAATTGCGTTCACAGGTTGATAGCTTGCGGCAGCGTTGTGAACTTCAAGAGTTAGAGCTTCAAAAGTCAACTAAGAAAACTCAAGAAGCTATAGCCCTCGCAGCAGAAGAATCTGCAAAGACTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTGCACAGCTCAAAGATATGGCTGAGAGGTTACCTCCAGGAGCTTATGACTCAGAGACAATAAAACTTCCTCAACTACCAAATGGTTTTGAGTCAAATGGCATTCATTTCTCTGATGCAAGTGGCGAGCGCCTCTTGAAATCTGATGCCACGAATGGCTCATACCTGGCATCAGCAACTGGAGGCGACTCAATGACGAATGGAACTCAAGGGACTCTTCAGTCAGCCAGGGAATCATATATGCTCAATGAGAAAAGTTACCAGCCGAATTCTGGATTTGCATTGTCAAACACCAGAGATGATGAACAGAATGCTGCTGGCGGGCTCCTGACATGTAGCAGTAATGTGTCTGATGCCTCTAATGCACGGGAATCTGCAGTTAGTCAAGACAGTCTGAATGGTTTCAGGTCGAAAAGCCCTGTCCCTGTAGGTTCTAACAATCAAGTTGAAGCCGAGTGGATTGAACAGTATGAACCTGGTGTGTACATAACTTTAGTTGCCCTTCGAGATGGAACTAGAGATCTGAAACGAGTGCGCTTCAGCCGAAGAAGATTTGGGGAGCACCAAGCGGAAACATGGTGGTCGGAGAATCGTGAAAAGGTATATGAAAGATATAACGTTCGTGGGTCAGACAAGACATCAGTATCCGGACAAACTGCAAGACGATCAGAAGGCGGATTGTCACCTACGTCTTCTCACCATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_8986.p1 GENE.S_Transcript_8986~~S_Transcript_8986.p1 ORF type:complete len:1127 (+),score=248.40,RCC1|PF00415.14|0.03,RCC1|PF00415.14|3.8e-10,RCC1|PF00415.14|1.3e-09,RCC1|PF00415.14|9.5e-14,RCC1|PF00415.14|5.1e-12,RCC1|PF00415.14|0.00017,RCC1|PF00415.14|8.1e-13,BRX|PF08381.7|2.4e-29,RCC1_2|PF13540.2|7e+03,RCC1_2|PF13540.2|1.4e+03,RCC1_2|PF13540.2|0.0064,RCC1_2|PF13540.2|3.2e-07,RCC1_2|PF13540.2|0.0019,RCC1_2|PF13540.2|0.0087,RCC1_2|PF13540.2|0.23,RCC1_2|PF13540.2|7.7e-06,BRX_N|PF13713.2|4e-20,FYVE|PF01363.17|1.2e-14,PH_12|PF16457.1|1.3e-06,PH_12|PF16457.1|6.4e+02 S_Transcript_8986:150-3530(+)
MADLVSYGNSHRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDETTLIWLSSGREKSIKLSCVSRVIPGQRTAVFRRYLRPDKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLTALIAAAKGGRSKIDGWNDEGLSFQDNRDLISSSPSDSSATLTRYLSSPEGSLSFHGGLSPKRNQFENFMPSEKSHVALDNKNMQAKGPGSDVFRVSVSSAPSTSSHGSAGDDCDALGDVYIWGEVICDNSSRLGAEKNVNFVGTRADLLLPKPLESNVVLDVHNIACGVRHASLVTRQGEVFTWGEESGGRLGHGVEKDVLQPRLVESLAAYNVDFVACGEFHTCAVTFSGELYTWGDGTHNAGLLGHGTEVSHWIPKRIAGPLEGLQVASVTCGPWHTAIITSTGQLFTFGDGTFGVLGHGDRENVPYPREVESLSGLRTISVACGVWHTAAVVEVIVTQSNSSVSSGKLFTWGDGDKNRLGQGDKEPRLKPTCVPSLIEYNFQKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPFADGKLPCLVEDRLAAETVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKYITCGSTYTAAICLHKWVSGAEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPSKPYRVCDSCYAKLIKVSETGSSRGKSSGPRLSGENKDRLDKAELRLSKSMLPSNLDLIKQLDTKAAKQGKKSETFSLVQSQTSQTPSLLQLKDVVLSGSNDVKQTIPRPIATASSISRPVSPFSRKPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVIKLRSQVDSLRQRCELQELELQKSTKKTQEAIALAAEESAKTKAAKEVIKSLTAQLKDMAERLPPGAYDSETIKLPQLPNGFESNGIHFSDASGERLLKSDATNGSYLASATGGDSMTNGTQGTLQSARESYMLNEKSYQPNSGFALSNTRDDEQNAAGGLLTCSSNVSDASNARESAVSQDSLNGFRSKSPVPVGSNNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRGSDKTSVSGQTARRSEGGLSPTSSHH*

Click here to download the sequence:
Link to NCBI Protein BLAST