Transcript Information: S_Transcript_8987.p1


Annotated TAIR IDAT5G42140.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16837547-16841640 | Reverse length=1073
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0678056051153
Replicate 21.5888840216317
Replicate 32.3907250478742
Condition 2: 8 Hour
Replicate 12.6108245347107
Replicate 22.5548098755243
Replicate 32.1491286679919
Condition 3: 24 Hour
Replicate 12.135045197126
Replicate 21.4922674288953
Replicate 31.5569163213035


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_8987.p1 GENE.S_Transcript_8987~~S_Transcript_8987.p1 ORF type:3prime_partial len:972 (+),score=216.45,RCC1|PF00415.14|0.025,RCC1|PF00415.14|3.2e-10,RCC1|PF00415.14|1.1e-09,RCC1|PF00415.14|8e-14,RCC1|PF00415.14|3.1e-11,RCC1|PF00415.14|0.00014,RCC1|PF00415.14|6.8e-13,RCC1_2|PF13540.2|5.9e+03,RCC1_2|PF13540.2|1.2e+03,RCC1_2|PF13540.2|0.0054,RCC1_2|PF13540.2|2.7e-07,RCC1_2|PF13540.2|0.0016,RCC1_2|PF13540.2|0.0073,RCC1_2|PF13540.2|0.14,RCC1_2|PF13540.2|6.5e-06,BRX_N|PF13713.2|3.4e-20,FYVE|PF01363.17|9.8e-15,PH_12|PF16457.1|1.1e-06,PH_12|PF16457.1|8.4e+02 S_Transcript_8987:150-3062(+)
ATGGCAGATCTTGTTAGCTATGGTAATTCCCATCGTGACATTGAGCAGGCATTAATTGCTTTGAAGAAGGGTGCTCAGTTACTTAAATACGGTCGCAAGGGAAAGCCCAAATTTTGTCCATTTAGACTTTCTAGTGATGAAACAACTCTGATTTGGTTATCTAGTGGCAGGGAGAAAAGTATTAAGTTATCTTGTGTGTCAAGAGTAATTCCTGGGCAGAGAACTGCTGTTTTTAGAAGGTATTTGCGCCCAGACAAGGATTATTTATCATTTTCCCTTATTTACAACAACGGAAAACGATCTCTTGATCTGATTTGCAAGGATAAAGTCGAGGCTGAGGTGTGGATTGCAGGTCTCACAGCACTTATTGCTGCTGCGAAGGGTGGCCGGTCGAAAATTGATGGATGGAATGATGAAGGCCTTTCCTTCCAGGACAACAGAGACTTGATATCAAGCAGTCCAAGTGACAGTTCGGCTACTCTTACACGATATCTTAGCTCTCCTGAGGGTTCTCTCAGTTTTCATGGTGGTTTATCTCCGAAGCGGAATCAGTTTGAGAATTTTATGCCTTCTGAGAAATCACATGTAGCTTTAGATAATAAAAATATGCAAGCAAAAGGACCGGGTTCAGATGTTTTCCGAGTTAGTGTTTCTAGTGCACCTAGCACTTCTAGTCATGGTTCTGCAGGTGATGATTGTGATGCTCTTGGTGATGTGTACATTTGGGGTGAGGTTATATGTGATAATTCTTCCAGACTTGGGGCTGAGAAAAATGTAAATTTTGTTGGCACAAGAGCAGATCTCCTTCTTCCTAAGCCATTGGAGTCTAATGTGGTTTTGGATGTTCACAACATAGCTTGTGGTGTCAGGCATGCTTCCCTTGTCACTCGGCAAGGTGAAGTTTTCACTTGGGGTGAGGAATCTGGAGGTAGGCTGGGACATGGTGTAGAAAAGGATGTTCTTCAACCTCGTCTTGTTGAATCATTAGCTGCTTATAACGTTGATTTTGTCGCATGTGGTGAGTTTCATACCTGTGCTGTAACATTTTCTGGTGAGTTGTACACATGGGGTGATGGCACTCATAATGCTGGTCTCCTCGGTCATGGCACTGAAGTCAGTCACTGGATACCAAAGAGAATTGCTGGACCTCTTGAAGGCCTTCAAGTGGCTTCAGTAACTTGTGGTCCTTGGCATACTGCAATAATAACATCGACTGGGCAGCTTTTTACGTTTGGAGATGGGACTTTTGGTGTCTTGGGCCATGGAGACCGTGAAAATGTTCCTTATCCAAGGGAGGTGGAGTCTCTATCTGGTTTGAGGACAATTTCTGTTGCATGTGGGGTTTGGCATACAGCAGCTGTTGTTGAAGTTATTGTAACTCAATCCAATTCGAGTGTTTCATCGGGGAAATTATTTACTTGGGGTGATGGTGATAAGAATCGTCTTGGTCAAGGTGACAAGGAACCCCGGCTGAAACCAACTTGTGTACCGTCACTAATAGAGTACAACTTTCATAAAGTTGCTTGTGGGCATAGTTTAACTGTTGGATTGACCACATCAGGTCATGTTTTTACCATGGGGAGTACAGTTTACGGTCAGCTAGGGAATCCGTTTGCTGATGGAAAATTACCTTGTTTGGTCGAAGACAGGCTTGCTGCTGAGACTGTTGAAGAGATTGCTTGTGGTGCATATCACGTGGCAGTGTTAACTTCCAGGAATGAGGTTTATACATGGGGAAAGGGAGCTAATGGGAGGCTGGGTCATGGAGACATCGAAGACCGAAAAGCACCAACTTTGGTTGAGGCTTTGAAAGATAGACATGTTAAATATATTACTTGTGGTTCAACATACACGGCAGCTATATGTCTTCACAAATGGGTATCTGGTGCCGAGCAATCCCAGTGTTCTTCTTGTAGACAGGCTTTTGGATTTACTCGAAAAAGGCATAATTGCTACAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCAAAGAAAGCACTACGAGCTGCACTTGCTCCAAATCCTAGCAAACCATATCGTGTGTGTGATTCTTGTTATGCCAAACTGATTAAAGTTTCAGAAACTGGTAGCAGTAGAGGAAAAAGTTCTGGGCCTCGGCTCTCAGGTGAAAACAAAGATAGGTTAGATAAGGCTGAGCTACGGCTGTCGAAGTCTATGTTGCCTTCAAATCTTGATCTCATCAAGCAATTAGATACGAAAGCTGCCAAACAGGGAAAGAAATCTGAGACATTCTCGTTGGTTCAGAGTCAGACTTCCCAAACCCCTTCCTTGTTACAGCTGAAAGATGTTGTTTTATCTGGCAGTAATGATGTGAAGCAAACAATACCAAGGCCAATTGCGACAGCTAGTTCCATTTCAAGACCTGTGTCTCCTTTCTCAAGGAAGCCAAGTCCTCCACGTTCTGCTACTCCAGTTCCAACTACTTCTGGCTTGTCGTTCTCCAAAAGCATTGCTGACAGTTTGAAAAAAACTAACGAGCTCCTAAATCAGGAAGTAATTAAATTGCGTTCGCAGGTATTTCTTATAGTTCCCATCATGTGTCTCAGTCATTTGAATCCTGTGCTGATGGTCTTGTATGTGGAAAAGGTTGATAGCTTGCGGCAGCGTTGTGAACTTCAAGAGTTAGAGCTTCAAAAGTCAACTAAGAAAACTCAAGAAGCTATAGCCCTCGCAGCAGAAGAATCTGCAAAGACTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTGCACAGCTCAAAGATATGGCTGAGAGGTTACCTCCAGGAGCTTATGACTCAGAGACAATAAAACTTCCTCAACTACCAAATGGTTTTGAGTCAAATGGCATTCATTTCTCTGATGCAAGTGGCGAGCGCCTCTTGAAATCTGATGCCACGAATGGCTCATAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_8987.p1 GENE.S_Transcript_8987~~S_Transcript_8987.p1 ORF type:3prime_partial len:972 (+),score=216.45,RCC1|PF00415.14|0.025,RCC1|PF00415.14|3.2e-10,RCC1|PF00415.14|1.1e-09,RCC1|PF00415.14|8e-14,RCC1|PF00415.14|3.1e-11,RCC1|PF00415.14|0.00014,RCC1|PF00415.14|6.8e-13,RCC1_2|PF13540.2|5.9e+03,RCC1_2|PF13540.2|1.2e+03,RCC1_2|PF13540.2|0.0054,RCC1_2|PF13540.2|2.7e-07,RCC1_2|PF13540.2|0.0016,RCC1_2|PF13540.2|0.0073,RCC1_2|PF13540.2|0.14,RCC1_2|PF13540.2|6.5e-06,BRX_N|PF13713.2|3.4e-20,FYVE|PF01363.17|9.8e-15,PH_12|PF16457.1|1.1e-06,PH_12|PF16457.1|8.4e+02 S_Transcript_8987:150-3062(+)
MADLVSYGNSHRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDETTLIWLSSGREKSIKLSCVSRVIPGQRTAVFRRYLRPDKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLTALIAAAKGGRSKIDGWNDEGLSFQDNRDLISSSPSDSSATLTRYLSSPEGSLSFHGGLSPKRNQFENFMPSEKSHVALDNKNMQAKGPGSDVFRVSVSSAPSTSSHGSAGDDCDALGDVYIWGEVICDNSSRLGAEKNVNFVGTRADLLLPKPLESNVVLDVHNIACGVRHASLVTRQGEVFTWGEESGGRLGHGVEKDVLQPRLVESLAAYNVDFVACGEFHTCAVTFSGELYTWGDGTHNAGLLGHGTEVSHWIPKRIAGPLEGLQVASVTCGPWHTAIITSTGQLFTFGDGTFGVLGHGDRENVPYPREVESLSGLRTISVACGVWHTAAVVEVIVTQSNSSVSSGKLFTWGDGDKNRLGQGDKEPRLKPTCVPSLIEYNFHKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPFADGKLPCLVEDRLAAETVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKYITCGSTYTAAICLHKWVSGAEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPSKPYRVCDSCYAKLIKVSETGSSRGKSSGPRLSGENKDRLDKAELRLSKSMLPSNLDLIKQLDTKAAKQGKKSETFSLVQSQTSQTPSLLQLKDVVLSGSNDVKQTIPRPIATASSISRPVSPFSRKPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVIKLRSQVFLIVPIMCLSHLNPVLMVLYVEKVDSLRQRCELQELELQKSTKKTQEAIALAAEESAKTKAAKEVIKSLTAQLKDMAERLPPGAYDSETIKLPQLPNGFESNGIHFSDASGERLLKSDATNGSY

Click here to download the sequence:
Link to NCBI Protein BLAST