Transcript Information: S_Transcript_8996.p5


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.9692713050872
Replicate 26.8044117326915
Replicate 37.066842798389
Condition 2: 8 Hour
Replicate 135.675185670718
Replicate 236.798554771887
Replicate 339.245065216648
Condition 3: 24 Hour
Replicate 16.7372070578468
Replicate 25.9307170480161
Replicate 36.6001611527407


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_8996.p5 GENE.S_Transcript_8996~~S_Transcript_8996.p5 ORF type:complete len:107 (+),score=8.83,UBN2_3|PF14244.2|3.3e-28,Retrotrans_gag|PF03732.13|5.8e-06 S_Transcript_8996:1606-1926(+)
ATGGAGATAGCCTTGGCCACTAAGCTCAAACTTGGATTTGTTACTGGTACGGTTACTAGATCTGAAACTGATTTTGTTAAGGCTGAACAATGTGATACATGTAATTCTCTGATTATAGCCTGGTTGTTAAACTCTATGATTGAATCAATTAGAAAATCTGTCTTGTACTATGATTCTGCTCATTCTATGTGGTTACATCTTGAGAAAAGGTTCTCCATTAACAATGGCTCCAGGAAATATAAATTGAATAAGGATGTATATGATCTAAGGCAGAATGGAAATAGTATTAGTGAATTTTATACCAGAATGAGGTGTCTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_8996.p5 GENE.S_Transcript_8996~~S_Transcript_8996.p5 ORF type:complete len:107 (+),score=8.83,UBN2_3|PF14244.2|3.3e-28,Retrotrans_gag|PF03732.13|5.8e-06 S_Transcript_8996:1606-1926(+)
MEIALATKLKLGFVTGTVTRSETDFVKAEQCDTCNSLIIAWLLNSMIESIRKSVLYYDSAHSMWLHLEKRFSINNGSRKYKLNKDVYDLRQNGNSISEFYTRMRCL*

Click here to download the sequence:
Link to NCBI Protein BLAST