Transcript Information: S_Transcript_90033.p1


Annotated TAIR IDAT1G79080.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:29747102-29748832 | Reverse length=576
E-Value5.2E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.2903457464972
Replicate 26.0171244247768
Replicate 37.1256025777548
Condition 2: 8 Hour
Replicate 14.5558788404784
Replicate 26.2031034864696
Replicate 36.249418956915
Condition 3: 24 Hour
Replicate 14.9150987853837
Replicate 25.0993576046782
Replicate 35.789605647538


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90033.p1 GENE.S_Transcript_90033~~S_Transcript_90033.p1 ORF type:complete len:440 (+),score=71.11,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|3.6e-08,PPR_2|PF13041.2|5.8e-16,PPR_2|PF13041.2|3e-15,PPR_2|PF13041.2|6.2e-10,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|60,PPR_2|PF13041.2|6.3e-10,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|2.9e-11,PPR_1|PF12854.3|7e-07,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|6.4e-10,PPR_1|PF12854.3|2.4e-12,PPR_1|PF12854.3|1e-08,PPR_1|PF12854.3|2.6e-06,PPR_1|PF12854.3|9.2,PPR_1|PF12854.3|18,PPR_1|PF12854.3|3.6e-09,PPR_1|PF12854.3|0.19,PPR_1|PF12854.3|0.0053,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|0.00022,PPR|PF01535.16|0.22,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|3e-06,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|0.089,PPR|PF01535.16|2.1e+02,PPR|PF01535.16|0.66,PPR|PF01535.16|6.1e-06,PPR|PF01535.16|0.00055,PPR|PF01535.16|36,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|24,PPR_3|PF13812.2|0.072,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|5.8e-05,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|5.2e+03,PPR_3|PF13812.2|65,PPR_3|PF13812.2|0.083,PPR_3|PF13812.2|0.034,PPR_3|PF13812.2|1.3e+02 S_Transcript_90033:590-1909(+)
ATGCTACATCCTATACATTCCTTGTTAACCATTTGTGTAAGAGAGGGAATGTTGGGTATGCAATGCAATTGGTTGAGAAGATGGAACAGTATGGCTACCCAACCAACCAATACAGTTACCTACAATTCACTTGTTAAAGGGCTTTGTATGATTGGGAACTTGAATAAGAGTCTGCAGCTTTTGGAGCAATTGACAAAGAAACGGCTTGAGCCTAATGTTTTTACTTACTCATTCTTGCTGGAGGCTGCATATAAAGAAAGAGGCGTCGATGAAGCAATGAGGTTACTTGATGAGATAATTGCCAAAGGTGGGAAACCCAATTTGGTAAGCTACAATGTGCTCTTAACAGGTCTGTGTAAGGAAGGGCGAACGCAGGAGGCAATCAGCCTATTTAGAAACTTGCCCTTGAAAGGATTTTATCCGAATGTGGTGACTTACAATATTTTGCTGAGGACTTTGTGCTGTGAAGGACGGTGGAAAGAGGCATACGAGCTTCTGGGTGAAATGGACAATGAAGAACGAGCCCCATCTATTGTTACCTACAACATCTTGATTAGTTCACTGGCTCTCCATGGTCAAATCCATCATGCGTTTGAGGTTTTGGAAGAAATGATGAGGGCTGGCTTCAAGCCGACGGGGGCAACTTTCAACCCTATTATCGCTCATCTCTGCAAAGAGGGTAAGGTAGGTCAAGTAATAAAGGTTCTAGATCAGATGATTTTTCAGCATTGCCATCATAATGAGGGAACATATAATGCCATTGCTAAACTCTGTGATGATGGAAGAGTTCAAGAAGGATTCTCCATAATCCAACAATTAGGTAGTAAATCTAGTTTATCAGCTCATGACTTCAACAGAACTGTCCTCACTAGCTTGTGCAGGAAAAACAACACTTATCCCGCACTAATCTTACTGAATGAAATGATTAAGCATGGATTTGTTCCTGACTCCTATACTTATTCCTCTTTGTTAAGAGGACTGTGCTTGGAAGGAATGCTGGATGCTGCAATCACTATTTTCAAGTTAATGGAAGAAAATGACCGCAGACCTGATGTTGATAATTGCAATGCTTTGATACTTGGATTATGTAAGTCTCGTAGAACTGATTTGTCTTTGGATATATTTGGAATGATGGTAGAGAAAGGCTATAAGCCTAATGAGATGACTTACACCATTATAATAGAAGGCATAGCCCATGAAGAGGAAACAGAGCTAGCAGCAGAAGTTTTGGAAAAAGTATACAAGAGACAAGCAGTGAGCAGGAACACTGTGGAAAGACTTGTGATGCAATATGACCTCAAGGGTTTAGCTGCCAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90033.p1 GENE.S_Transcript_90033~~S_Transcript_90033.p1 ORF type:complete len:440 (+),score=71.11,PPR_2|PF13041.2|1.1e-11,PPR_2|PF13041.2|3.6e-08,PPR_2|PF13041.2|5.8e-16,PPR_2|PF13041.2|3e-15,PPR_2|PF13041.2|6.2e-10,PPR_2|PF13041.2|2.5e-07,PPR_2|PF13041.2|60,PPR_2|PF13041.2|6.3e-10,PPR_2|PF13041.2|0.33,PPR_2|PF13041.2|2.9e-11,PPR_1|PF12854.3|7e-07,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|6.4e-10,PPR_1|PF12854.3|2.4e-12,PPR_1|PF12854.3|1e-08,PPR_1|PF12854.3|2.6e-06,PPR_1|PF12854.3|9.2,PPR_1|PF12854.3|18,PPR_1|PF12854.3|3.6e-09,PPR_1|PF12854.3|0.19,PPR_1|PF12854.3|0.0053,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|0.00022,PPR|PF01535.16|0.22,PPR|PF01535.16|1.9e-06,PPR|PF01535.16|3e-06,PPR|PF01535.16|1.3e-07,PPR|PF01535.16|0.089,PPR|PF01535.16|2.1e+02,PPR|PF01535.16|0.66,PPR|PF01535.16|6.1e-06,PPR|PF01535.16|0.00055,PPR|PF01535.16|36,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|24,PPR_3|PF13812.2|0.072,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|5.8e-05,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|5.2e+03,PPR_3|PF13812.2|65,PPR_3|PF13812.2|0.083,PPR_3|PF13812.2|0.034,PPR_3|PF13812.2|1.3e+02 S_Transcript_90033:590-1909(+)
MLHPIHSLLTICVREGMLGMQCNWLRRWNSMATQPTNTVTYNSLVKGLCMIGNLNKSLQLLEQLTKKRLEPNVFTYSFLLEAAYKERGVDEAMRLLDEIIAKGGKPNLVSYNVLLTGLCKEGRTQEAISLFRNLPLKGFYPNVVTYNILLRTLCCEGRWKEAYELLGEMDNEERAPSIVTYNILISSLALHGQIHHAFEVLEEMMRAGFKPTGATFNPIIAHLCKEGKVGQVIKVLDQMIFQHCHHNEGTYNAIAKLCDDGRVQEGFSIIQQLGSKSSLSAHDFNRTVLTSLCRKNNTYPALILLNEMIKHGFVPDSYTYSSLLRGLCLEGMLDAAITIFKLMEENDRRPDVDNCNALILGLCKSRRTDLSLDIFGMMVEKGYKPNEMTYTIIIEGIAHEEETELAAEVLEKVYKRQAVSRNTVERLVMQYDLKGLAAR*

Click here to download the sequence:
Link to NCBI Protein BLAST