Transcript Information: S_Transcript_90060.p1


Annotated TAIR IDAT5G52380.1
Annotated Gene NameVASCULAR-RELATED NAC-DOMAIN 6
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21261521-21263061 | Reverse length=268
E-Value3.8E-114
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.140326098448
Replicate 29.3088846305793
Replicate 37.1687711687085
Condition 2: 8 Hour
Replicate 13.400726695091
Replicate 24.6824799478498
Replicate 33.8241055503953
Condition 3: 24 Hour
Replicate 17.1122876481004
Replicate 28.5083412230141
Replicate 36.8711217316263


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_90060.p1 GENE.S_Transcript_90060~~S_Transcript_90060.p1 ORF type:internal len:301 (-),score=66.28,zf-CCHC|PF00098.19|0.051,zf-CCHC|PF00098.19|1.2e+02,zf-CCHC|PF00098.19|1.9e-05,zf-CCHC|PF00098.19|6.8e-05,zf-CCHC|PF00098.19|0.26,zf-CCHC_4|PF14392.2|2.2,zf-CCHC_4|PF14392.2|0.28,zf-CCHC_4|PF14392.2|0.036,zf-CCHC_4|PF14392.2|0.49,zf-CCHC_4|PF14392.2|1.3 S_Transcript_90060:3-902(-)
AGCGCCAAACCTTCTGCAAGAATTTCTCAGTTTTTGTCCAAATTTCTTGTATGCTTATTGTTAATCACTAATAACAAGAACATGGTGAGCAAAAGGCAGAGAGAAGCTACAAAAAGGTTCAAAGCAGAGCACCCAGAAATGTTCCCAAAGGCTGAACCAACGCCCCCAAAAGACCCAACTAAGAAGAAGAAGAAGAAAAAACAACCCAACTTCAAGCGCAAGAAATCTGATGATGGTAAACCCCAGAAATCAAAGTTCAGAAAACAGCTCTTAAGAGTACCTGGTTTGAAGCCTGGTGAAAGCTGCTTTATTTGCAAGGACTTGCATCATATTGCTAAGAACTGCCCCAAAAAATCTGAGTGGGAAAAGAACAAGATATGTTTATTTTGTCGACATCATGGGCATAGTTTGAAGAACTGTCCTAACAAGACTGAAGAAGTTACTGAAGAGAAGCTGTGCTATAATTGTGGTGAAACTGGGCACTCGCTATCTAAATGCCCCCAACCTTTGCAAGATGGTGGAACAAAATTTGCACTTTGCTTTATATGCAAAGAACGTGGACACTTGAGTAAGAACTGTCCCAAAAATACACATGGGATATACCCAAAGGGCGGGTGCTGTAAAATATGTGGTGGTGTAACCCATTTAGCCAAAGATTGCCCAGACAAAGGAAAAGGATTCAGTGTTGGCAATGGTCGTGGTAGAGTAATTGATCTAGATCAGCCAAGGCCACAATTAACCAAGTTTGTGAGCGGGGATGATCTTGAGGATGATTTCATGATCGAGGATGACAACAAAGGCAAGAATGAGACCAAGAAGTCAAAGACTGACCAGTCTTCTCAGGTGAACCATAATCAAAATACAAAGGTAAAGAAGAAACAAGGACCCAAAGTGGTGAAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_90060.p1 GENE.S_Transcript_90060~~S_Transcript_90060.p1 ORF type:internal len:301 (-),score=66.28,zf-CCHC|PF00098.19|0.051,zf-CCHC|PF00098.19|1.2e+02,zf-CCHC|PF00098.19|1.9e-05,zf-CCHC|PF00098.19|6.8e-05,zf-CCHC|PF00098.19|0.26,zf-CCHC_4|PF14392.2|2.2,zf-CCHC_4|PF14392.2|0.28,zf-CCHC_4|PF14392.2|0.036,zf-CCHC_4|PF14392.2|0.49,zf-CCHC_4|PF14392.2|1.3 S_Transcript_90060:3-902(-)
SAKPSARISQFLSKFLVCLLLITNNKNMVSKRQREATKRFKAEHPEMFPKAEPTPPKDPTKKKKKKKQPNFKRKKSDDGKPQKSKFRKQLLRVPGLKPGESCFICKDLHHIAKNCPKKSEWEKNKICLFCRHHGHSLKNCPNKTEEVTEEKLCYNCGETGHSLSKCPQPLQDGGTKFALCFICKERGHLSKNCPKNTHGIYPKGGCCKICGGVTHLAKDCPDKGKGFSVGNGRGRVIDLDQPRPQLTKFVSGDDLEDDFMIEDDNKGKNETKKSKTDQSSQVNHNQNTKVKKKQGPKVVN

Click here to download the sequence:
Link to NCBI Protein BLAST